View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19457_low_17 (Length: 231)

Name: NF19457_low_17
Description: NF19457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19457_low_17
NF19457_low_17
[»] chr3 (9 HSPs)
chr3 (1-227)||(39558968-39559194)
chr3 (16-231)||(50814322-50814534)
chr3 (16-231)||(50861330-50861542)
chr3 (15-225)||(39558718-39558928)
chr3 (57-200)||(50814636-50814776)
chr3 (57-200)||(50861088-50861228)
chr3 (15-99)||(49868709-49868793)
chr3 (101-200)||(49857492-49857591)
chr3 (101-220)||(49760622-49760738)
[»] chr4 (1 HSPs)
chr4 (68-124)||(31210971-31211027)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 39558968 - 39559194
Alignment:
Q  1 aatcattacgacacgaggagttgaaaacctaagcatcgatctctgccataaatccaaaaccacattgccttctttagttctaactaacaaaaccttgacc 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39558968 aatcattacaacacgaggagttgaaaacctaagcatcgatctctgccataaatccaaaaccacattgccttctttagttctaactaacaaaaccttgacc 39559067  T
Q  101 gtcctcaaattgaagagggtaacattgaacgaagaagttcctttcgtcgatcttccctcgctaaaagtgcttcacttaaaatctgtcagttacacatatt 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39559068 gtcctcaaattgaagagggtaacattgaatgaagaagttcctttcgtcgatcttccctcgctaaaagtgcttcacttaaaatctgtcagttacacatatt 39559167  T
Q  201 ctgactatatcttgaaacttctatctg 227  Q
    |||||||||||||||||||||||||||    
T  39559168 ctgactatatcttgaaacttctatctg 39559194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 50814322 - 50814534
Alignment:
Q  16 aggagttgaaaacctaagcatcgatctctgccataaatccaaaaccacattgccttctttagttctaactaacaaaaccttgaccgtcctcaaattgaag 115  Q
    |||||||||||||||||||||  |||||||||||     | |||||||| ||||||||||  ||||||||| ||||||||||||   |||||||||||||    
T  50814322 aggagttgaaaacctaagcataaatctctgccatcttaacgaaaccacactgccttctttcattctaactagcaaaaccttgacatccctcaaattgaag 50814421  T
Q  116 agggtaacattgaacgaagaagttcctttcgtcgatcttccctcgctaaaagtgcttcacttaaaatctgtcagttacacatattctgactatatcttga 215  Q
    |||||||||||||||   |||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||| || ||||| | |||| ||  |  |||    
T  50814422 agggtaacattgaac---gaagttcctttcgttgatcttccctcactaaaagtccttcacttagaatctgtcactttcacatgtcctgagtacttgatga 50814518  T
Q  216 aacttctatctggttg 231  Q
    ||||||||||| ||||    
T  50814519 aacttctatctagttg 50814534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 50861542 - 50861330
Alignment:
Q  16 aggagttgaaaacctaagcatcgatctctgccataaatccaaaaccacattgccttctttagttctaactaacaaaaccttgaccgtcctcaaattgaag 115  Q
    |||||||||||||||||||||  |||||||||||     | |||||||| ||||||||||  ||||||||| ||||||||||||   |||||||||||||    
T  50861542 aggagttgaaaacctaagcataaatctctgccatcttaacgaaaccacactgccttctttcattctaactagcaaaaccttgacatccctcaaattgaag 50861443  T
Q  116 agggtaacattgaacgaagaagttcctttcgtcgatcttccctcgctaaaagtgcttcacttaaaatctgtcagttacacatattctgactatatcttga 215  Q
    |||||||||||||||   |||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||| || ||||| | |||| ||  |  |||    
T  50861442 agggtaacattgaac---gaagttcctttcgttgatcttccctcactaaaagtccttcacttagaatctgtcactttcacatgtcctgagtacttgatga 50861346  T
Q  216 aacttctatctggttg 231  Q
    ||||||||||| ||||    
T  50861345 aacttctatctagttg 50861330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 39558718 - 39558928
Alignment:
Q  15 gaggagttgaaaacctaagcatcgatctctgcca---taaatccaaaaccacattgccttctttagttctaactaacaaaaccttgaccgtcctcaaatt 111  Q
    ||||||||||||||||||||||| |||||||| |   ||| ||| | | || | ||||| |||| |||||||||| |||||||||||| |||||||||||    
T  39558718 gaggagttgaaaacctaagcatcaatctctgcaagtataactccgatatcatactgcctgctttggttctaactaccaaaaccttgacagtcctcaaatt 39558817  T
Q  112 gaagagggtaacattgaacgaagaagttcctttcgtcgatcttccctcgctaaaagtgcttcacttaaaatctgtcagttacacatattctgactatatc 211  Q
    |||||| ||||||||||||   ||||||||||||||  ||||||||| ||||||||| ||||||||| |||||||| ||| | || ||| ||| || |||    
T  39558818 gaagagtgtaacattgaac---gaagttcctttcgttaatcttcccttgctaaaagtccttcacttagaatctgtcggtttcccacattatgagtacatc 39558914  T
Q  212 ttgaaacttctatc 225  Q
     |||||||||||||    
T  39558915 atgaaacttctatc 39558928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 57 - 200
Target Start/End: Original strand, 50814636 - 50814776
Alignment:
Q  57 aaaccacattgccttctttagttctaactaacaaaaccttgaccgtcctcaaattgaagagggtaacattgaacgaagaagttcctttcgtcgatcttcc 156  Q
    |||||| | ||||||||||  | ||||||| ||||||| |||||   ||||||||||||||| ||||||||||| |||   |||||||||| ||||||||    
T  50814636 aaaccatactgccttctttcatcctaactaccaaaaccctgacccaactcaaattgaagaggataacattgaaccaag---ttcctttcgttgatcttcc 50814732  T
Q  157 ctcgctaaaagtgcttcacttaaaatctgtcagttacacatatt 200  Q
    || ||||||||| ||||||||| |||||||||||| ||||||||    
T  50814733 cttgctaaaagtccttcacttagaatctgtcagtttcacatatt 50814776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 57 - 200
Target Start/End: Complemental strand, 50861228 - 50861088
Alignment:
Q  57 aaaccacattgccttctttagttctaactaacaaaaccttgaccgtcctcaaattgaagagggtaacattgaacgaagaagttcctttcgtcgatcttcc 156  Q
    |||||| | ||||||||||  | ||||||| ||||||| |||||   ||||||||||||||| ||||||||||| |||   |||||||||| ||||||||    
T  50861228 aaaccatactgccttctttcatcctaactaccaaaaccctgacccaactcaaattgaagaggataacattgaaccaag---ttcctttcgttgatcttcc 50861132  T
Q  157 ctcgctaaaagtgcttcacttaaaatctgtcagttacacatatt 200  Q
    || ||||||||| ||||||||| |||||||||||| ||||||||    
T  50861131 cttgctaaaagtccttcacttagaatctgtcagtttcacatatt 50861088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 49868793 - 49868709
Alignment:
Q  15 gaggagttgaaaacctaagcatcgatctctgccataaatccaaaaccacattgccttctttagttctaactaacaaaaccttgac 99  Q
    |||||||| ||||||||| |||||||||||||| | | |||||||| ||||||||| |||| ||||| |||| ||||||||||||    
T  49868793 gaggagttaaaaacctaaccatcgatctctgcctttactccaaaactacattgcctactttcgttcttactaccaaaaccttgac 49868709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 200
Target Start/End: Complemental strand, 49857591 - 49857492
Alignment:
Q  101 gtcctcaaattgaagagggtaacattgaacgaagaagttcctttcgtcgatcttccctcgctaaaagtgcttcacttaaaatctgtcagttacacatatt 200  Q
    |||||||||||||||||| ||||||||||| | |||| |||||| || |||||||| ||||| ||| | ||||||||  |||| ||| ||| ||||||||    
T  49857591 gtcctcaaattgaagaggataacattgaactatgaaggtcctttggttgatcttccgtcgctcaaaatccttcacttggaatccgtctgtttcacatatt 49857492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 220
Target Start/End: Complemental strand, 49760738 - 49760622
Alignment:
Q  101 gtcctcaaattgaagagggtaacattgaacgaagaagttcctttcgtcgatcttccctcgctaaaagtgcttcacttaaaatctgtcagttacacatatt 200  Q
    |||||||||||||||||| |||||||||  | ||   |||| | ||| |||||||| ||||| ||||  ||||||||  ||  ||||| |||||||||||    
T  49760738 gtcctcaaattgaagaggataacattgactggag---ttccgtacgttgatcttccttcgctcaaagcccttcacttggaacttgtcacttacacatatt 49760642  T
Q  201 ctgactatatcttgaaactt 220  Q
     ||| |||||||||||||||    
T  49760641 atgaatatatcttgaaactt 49760622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 31210971 - 31211027
Alignment:
Q  68 ccttctttagttctaactaacaaaaccttgaccgtcctcaaattgaagagggtaaca 124  Q
    |||||||| ||||||| || ||||||||||||  |||||||||||||||| ||||||    
T  31210971 ccttctttggttctaaataccaaaaccttgacattcctcaaattgaagagcgtaaca 31211027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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