View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19457_low_19 (Length: 212)

Name: NF19457_low_19

Description: NF19457

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19457_low_19

[»] chr4 (1 HSPs)

[»] chr3 (1 HSPs)

Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 174; E-Value: 8e-94

Query Start/End: Original strand, 21 - 194

Target Start/End: Original strand, 27744315 - 27744488

Alignment:

Q	21	gaagaagaagcttatcagtgatcctcgatttgtaggaatgcacacagaccctcgttttcgagaggctcgaaaggatgaaacaaaagtggcaattgactct	120	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	27744315	gaagaagaagcttatcagtgatcctcgatttgtaggaatgcacacagaccctcgttttcgagaggctcgaaaggatgaaacaaaagtggcaattgactct	27744414	T

Q	121	cgcttcaagcacatgttcaatgacaattcttttttctcttattctgcaccaatcgacaagagaggcaggtatat	194	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	27744415	cgcttcaagcacatgttcaatgacaattcttttttctcttattctgcaccaatcgacaagagaggcaggtatat	27744488	T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 41; E-Value: 0.00000000000002

Query Start/End: Original strand, 21 - 81

Target Start/End: Original strand, 49513261 - 49513321

Alignment:

Q	21	gaagaagaagcttatcagtgatcctcgatttgtaggaatgcacacagaccctcgttttcga	81	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	49513261	gaagaagaagcttatcaatgatcctcggtttgtaggagtgctcacagaccctctttttcga	49513321	T

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