View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19457_low_3 (Length: 455)
Name: NF19457_low_3
Description: NF19457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19457_low_3 |
 | |
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| [»] scaffold0699 (1 HSPs) |
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Alignment Details
Target: scaffold0699 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: scaffold0699
Description:
Target: scaffold0699; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 3192 - 3627
Alignment:
| Q |
1 |
gttagcctttaaaatgcatcgacgctgcatcatcaagccgaagattgcgcggcgtaatgtacatgatattctttggatacaacatagagttggc-ttttt |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
3192 |
gttagcctttaaaatgcatcgacgctgcatcatcaagtcgaagattgcacggcgtaatgtacatgatattctttggatacaacatagagttggctttttt |
3291 |
T |
|
| Q |
100 |
aaaatgcaatgttaatgttgcacactatttcaagccgtaggttattccnnnnnnncaacatgagttcacgattctagagatgtttttactggttccacaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3292 |
aaaatgcaatgttaatgttgcacactatttcaagccgtaggttattcctttttttcaacatgagttcacgattctagagatgtttttactggttccacaa |
3391 |
T |
|
| Q |
200 |
tgtgcttcaagcatggtacttcccggttgagattaggtgccatttaagatgggaaagatgaatcctttcccatcccaccatgggaaatgtgttgttttga |
299 |
Q |
| |
|
|||||||| | ||| |||| | |||||||||||||||||||||||||| ||||| |||||| || | ||||||||||||| |||||||||||| |
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|
| T |
3392 |
tgtgcttcgaacattacccttcgcagttgagattaggtgccatttaagatgagaaaggtgaatcatt-----ttccaccatgggaaaggtgttgttttga |
3486 |
T |
|
| Q |
300 |
ccatagatatattaataaatatattcaatggttgagatggattacctataaccttttgttaacattttggttttaaacattctacaaaaattgggacccc |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
3487 |
ccatagatatattaataaatatattcaatggttgagatggattacctataaccttttgctaactttttggttttaaacattctacaaaaattgggacccc |
3586 |
T |
|
| Q |
400 |
acattatataggttaatgttattttatttaatgggcctatg |
440 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
3587 |
acattatataggttaatgttattttttttaatgggcctatg |
3627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 6e-72; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 247 - 440
Target Start/End: Complemental strand, 8427191 - 8427003
Alignment:
| Q |
247 |
gatgggaaagatgaatcctttcccatcccaccatgggaaatgtgttgttttgaccatagatatattaataaatatattcaatggttgagatggattacct |
346 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
8427191 |
gatgggaaaggtgaatcctttcccatc-----atgggaaaggtgttgttttaaccatagatatattaataaatatattcaatggttgagatgggttacct |
8427097 |
T |
|
| Q |
347 |
ataaccttttgttaacattttggttttaaacattctacaaaaattgggaccccacattatataggttaatgttattttatttaatgggcctatg |
440 |
Q |
| |
|
|||||||||||||||| |||| ||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
8427096 |
ataaccttttgttaactttttagttttgaacaatctacaaaaattgggaccccacattatataggttaatgttgttttatttaatgggcctatg |
8427003 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 344
Target Start/End: Complemental strand, 41553363 - 41553291
Alignment:
| Q |
272 |
tcccaccatgggaaatgtgttgttttgaccatagatatattaataaatatattcaatggttgagatggattac |
344 |
Q |
| |
|
||||||||| ||||| ||| | |||| ||||| |||||||||||||| | |||||||||||||||||| |||| |
|
|
| T |
41553363 |
tcccaccataggaaaggtgatcttttaaccattgatatattaataaaaaaattcaatggttgagatgggttac |
41553291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 402
Target Start/End: Original strand, 34825139 - 34825243
Alignment:
| Q |
298 |
gaccatagatatattaataaatatattcaatggttgagatggattacctataaccttttgttaacattttggttttaaacattctacaaaaattgggacc |
397 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| | |||| ||| |||||||||| ||| |||| |||| |||| | | || ||||||||| ||||| |
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|
| T |
34825139 |
gaccatagatatattaataaataaattgaatggctaagattgatcacctataacccttttataacttttttattttcatcctttaacaaaaatttggacc |
34825238 |
T |
|
| Q |
398 |
ccaca |
402 |
Q |
| |
|
||||| |
|
|
| T |
34825239 |
ccaca |
34825243 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 236 - 440
Target Start/End: Complemental strand, 43352177 - 43351979
Alignment:
| Q |
236 |
gtgccatttaagatgggaaagatgaatcctttcccatcccaccatgggaaatgtgttgttttgaccatagatatattaataaatatattcaatggttgag |
335 |
Q |
| |
|
||||||||||||||||||||| |||||| ||| ||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43352177 |
gtgccatttaagatgggaaagttgaatcattttcca-----ccatgaaaaaggtgttgttttgaccatagatatattaataaatatattcaatggttgag |
43352083 |
T |
|
| Q |
336 |
atggattacctataaccttttgttaacattttggttttaaacattctacaaaaattgggaccccacattatataggttaatgttattttatttaatgggc |
435 |
Q |
| |
|
|||| |||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43352082 |
atgggttacctataatcttttgttaactttttggttttaaaaattctacaaaaatt-ggaacccacattatataggttaatgttattttatttaatgggc |
43351984 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 272 - 435
Target Start/End: Complemental strand, 41237757 - 41237594
Alignment:
| Q |
272 |
tcccaccatgggaaatgtgttgttttgaccatagatatattaataaatatattcaatggttgagatggattacctataaccttttgttaacattttggtt |
371 |
Q |
| |
|
||||| ||||||||||||| | |||||| | | |||||||||||||| |||||||||||||||||||||| || | |||| ||| |||| |||||||| |
|
|
| T |
41237757 |
tcccatcatgggaaatgtgat-ttttgatctttgatatattaataaaaatattcaatggttgagatggatcacttgctacctattgctaactttttggtt |
41237659 |
T |
|
| Q |
372 |
ttaaacattctacaaaaattgggaccccacattata-taggttaatgttattttatttaatgggc |
435 |
Q |
| |
|
||||| || |||||||||| |||||||||||||| | | |||||||||||||||||||||||| |
|
|
| T |
41237658 |
ttaaaatttgtacaaaaattatgaccccacattatatttgtttaatgttattttatttaatgggc |
41237594 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 272 - 376
Target Start/End: Complemental strand, 32735055 - 32734951
Alignment:
| Q |
272 |
tcccaccatgggaaatgtgttgttttgaccatagatatattaataaatatattcaatggttgagatggattacctataaccttttgttaacattttggtt |
371 |
Q |
| |
|
||||| ||||||||| ||| |||||||||||| |||||||||||||| | || |||||||||||||| |||||| ||||| |||||||| |||||||| |
|
|
| T |
32735055 |
tcccatcatgggaaaggtgatgttttgaccattgatatattaataaaaaaatctaatggttgagatgggttacctccaacctattgttaactttttggtt |
32734956 |
T |
|
| Q |
372 |
ttaaa |
376 |
Q |
| |
|
||||| |
|
|
| T |
32734955 |
ttaaa |
32734951 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 242 - 337
Target Start/End: Original strand, 4270183 - 4270272
Alignment:
| Q |
242 |
tttaagatgggaaagatgaatcctttcccatcccaccatgggaaatgtgttgttttgaccatagatatattaataaatatattcaatggttgagat |
337 |
Q |
| |
|
||||| ||||||||| |||||||||||||| |||||||||||||||| |||||||| |||||||| ||||||| | |||||||||||||||| |
|
|
| T |
4270183 |
tttaacatgggaaaggtgaatcctttccca-----ccatgggaaatgtgtt-ttttgaccttagatataataataaaaaaattcaatggttgagat |
4270272 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 43615666 - 43615607
Alignment:
| Q |
51 |
ggcgtaatgtacatgatattctttggatacaacatagagttggctttttaaaatgcaatgt |
111 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||| || |||| || |||||||||||||||| |
|
|
| T |
43615666 |
ggcgtaatgtgcatgatattctt-ggatacaacctaaagtttgccttttaaaatgcaatgt |
43615607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 337
Target Start/End: Complemental strand, 7332067 - 7332009
Alignment:
| Q |
278 |
catgggaaatgtgttgttttgaccatagatatattaataaatatattcaatggttgagat |
337 |
Q |
| |
|
||||||||| ||||| |||||||| |||||||| ||||||| | |||||||||||||||| |
|
|
| T |
7332067 |
catgggaaaggtgtt-ttttgaccttagatataataataaaaaaattcaatggttgagat |
7332009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 296 - 435
Target Start/End: Original strand, 10742493 - 10742633
Alignment:
| Q |
296 |
ttgaccatagatatattaataaatatattcaatggttgagatggattacctataaccttttgttaacattttggttttaaacattctacaaaaattggga |
395 |
Q |
| |
|
|||| ||| |||||||||||||| ||||| | |||||||||||| |||| | ||||| |||||||| ||||||||||||| ||| | |||||||| || |
|
|
| T |
10742493 |
ttgatcattgatatattaataaaaatattgagtggttgagatgggttacttgcaacctattgttaactttttggttttaaaaattgaataaaaattgcga |
10742592 |
T |
|
| Q |
396 |
ccccacattatatagg-ttaatgttattttatttaatgggc |
435 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
10742593 |
ccccacattatataggtttaattttattttatttaatgggc |
10742633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 334
Target Start/End: Complemental strand, 14565253 - 14565167
Alignment:
| Q |
242 |
tttaagatgggaaagatgaatcctttcccatcccaccatgggaaatgtgttgttttgaccatagatatattaataaatatattcaatggttga |
334 |
Q |
| |
|
||||| ||||||||| |||||||||||||| |||||||||||||||| |||||||| |||||||| ||||||| | ||||||||||||| |
|
|
| T |
14565253 |
tttaacatgggaaaggtgaatcctttccca-----ccatgggaaatgtgtt-ttttgaccttagatataataataaaaaaattcaatggttga |
14565167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 296 - 435
Target Start/End: Original strand, 38863874 - 38864012
Alignment:
| Q |
296 |
ttgaccatagatatattaataaatatattcaatggttgagatggattacctataaccttttgttaacattttggttttaaacattctacaaaaattggga |
395 |
Q |
| |
|
|||| ||| |||||||||||||| ||| | ||||||||||||||||||||| |||| | |||||| ||||||||||||| | | || |||| ||| || |
|
|
| T |
38863874 |
ttgatcattgatatattaataaaaataatgaatggttgagatggattacctgaaacc--tagttaactttttggttttaaaaactgtataaaatttgtga |
38863971 |
T |
|
| Q |
396 |
ccccacattatatagg-ttaatgttattttatttaatgggc |
435 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
38863972 |
ccccacattacataggtttaatgttattttatttaatgggc |
38864012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 51894174 - 51894129
Alignment:
| Q |
292 |
tgttttgaccatagatatattaataaatatattcaatggttgagat |
337 |
Q |
| |
|
||||||||||||||||||| ||||| | |||||||||||||||||| |
|
|
| T |
51894174 |
tgttttgaccatagatataataatataaatattcaatggttgagat |
51894129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 276 - 434
Target Start/End: Original strand, 15823281 - 15823438
Alignment:
| Q |
276 |
accatgggaaatgtgttgttttgaccatagatatattaataaatatattcaatggttgagatggattacctataaccttttgttaacattttggttttaa |
375 |
Q |
| |
|
||||||||||||||| | ||| |||| | |||||||||||||| | |||||||||||||||||| || | |||| ||| |||| ||||||||||| |
|
|
| T |
15823281 |
accatgggaaatgtgatcttt-gacctttgatatattaataaaaaatttcaatggttgagatggaccacttgctacctattgctaactctttggttttaa |
15823379 |
T |
|
| Q |
376 |
acattctacaaaaattgggaccccacattatatagg-ttaatgttattttatttaatggg |
434 |
Q |
| |
|
| || |||||||||| ||||||||||||||| || ||||||||| ||||||||||||| |
|
|
| T |
15823380 |
aatttgtacaaaaattatgaccccacattatattggtttaatgtta-tttatttaatggg |
15823438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 428
Target Start/End: Original strand, 40646256 - 40646379
Alignment:
| Q |
305 |
gatatattaataaatatattcaatggttgagatggattacctataaccttttgttaacattttggttttaaacattctacaaaaattgggaccccacatt |
404 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| | | || | |||||| ||||| || ||||| ||||||| ||| ||||||||| |||||||||| |
|
|
| T |
40646256 |
gatatattaataaaaatattcaatggttgagattgttcacttgtaacctattgtt-actttttgtttttaaaaattgcacaaaaattatgaccccacatg |
40646354 |
T |
|
| Q |
405 |
atata-ggttaatgttattttattt |
428 |
Q |
| |
|
||| | | |||||| |||||||||| |
|
|
| T |
40646355 |
ataaatgtttaatggtattttattt |
40646379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 333
Target Start/End: Original strand, 10611258 - 10611314
Alignment:
| Q |
276 |
accatgggaaatgtgttgttttgaccatagatatattaataaatatattcaatggttg |
333 |
Q |
| |
|
|||||||||| |||||| |||||||| |||||||| ||||||| | |||||||||||| |
|
|
| T |
10611258 |
accatgggaagtgtgtt-ttttgaccttagatataataataaaaaaattcaatggttg |
10611314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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