View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19457_low_4 (Length: 452)
Name: NF19457_low_4
Description: NF19457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19457_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 10 - 190
Target Start/End: Complemental strand, 43463790 - 43463610
Alignment:
| Q |
10 |
aagaatattggaaaatcatcattcacaatatggtaataaaagttaatgttctgtataattaaacaattaatgcggtaagtttagtgattaaaaatcaagc |
109 |
Q |
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| T |
43463790 |
aagaagattggaaaatcatcattcacaatatggtaataaaagttaatgttctgtataattaaacaattaatgcggtaagtttagtgattaaaaatcaagc |
43463691 |
T |
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| Q |
110 |
ggtaaatgtgtaattttttctctcttaaaaacaactgtaatagctgaagatgcaacaaccataaacaataaaaaacactag |
190 |
Q |
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| T |
43463690 |
ggtaaatgtgtaattttttctctcttaaaaacaactgtaatagctgaagatgcaacaaccataaacaataaaaaacactag |
43463610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 296 - 436
Target Start/End: Complemental strand, 43463504 - 43463364
Alignment:
| Q |
296 |
gagtggtgaaacttacttagagcttcatgtgctgtaattcgtgttttaggatctctatcaagcatcttcttaaccaagtctttggcactttcagaaatac |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43463504 |
gagtggtgaaacttacttagagcttcatgtgctgtaattcgtgttttaggatctctatcaagcatcttcttaaccaagtctttggcactttcagaaatac |
43463405 |
T |
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| Q |
396 |
ttagccaaggatccgaagagaaatcaatttcaccatgtaaa |
436 |
Q |
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| T |
43463404 |
ttggccaaggatccgaagagaaatcaatttcaccatgtaaa |
43463364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 296 - 436
Target Start/End: Complemental strand, 43454788 - 43454648
Alignment:
| Q |
296 |
gagtggtgaaacttacttagagcttcatgtgctgtaattcgtgttttaggatctctatcaagcatcttcttaaccaagtctttggcactttcagaaatac |
395 |
Q |
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| T |
43454788 |
gagtagtgaaacttacttagaacttcatgagctttaattcgtgttttaggatctctatcaagcatcttcttaaccaagtctttggcactttcagatatac |
43454689 |
T |
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| Q |
396 |
ttagccaaggatccgaagagaaatcaatttcaccatgtaaa |
436 |
Q |
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| T |
43454688 |
ttggccaaggatcggaacagaaatcaacttcaccatgtaaa |
43454648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 190
Target Start/End: Complemental strand, 43455069 - 43454887
Alignment:
| Q |
10 |
aagaatattggaaaatcatcattcacaatatggtaataaaagttaatgttctgtataattaaacaattaatgcggtaagtttagtgattaaaaatcaagc |
109 |
Q |
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||||| ||||||| ||||||||||||||| | |||| |||| || |||||||| |||||||||||||||||||| | ||||||||| ||||||||||| |
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| T |
43455069 |
aagaagattggaacatcatcattcacaatttagtaacaaaaattcatgttctgcataattaaacaattaatgcgacagatttagtgatgaaaaatcaagc |
43454970 |
T |
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| Q |
110 |
ggtaaatgtgta---attttttctctcttaaaaacaactgtaatagctgaagatgcaacaaccataaacaataaaaaacactag |
190 |
Q |
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| T |
43454969 |
gctaaatgtttatttattttttct-tcttaaaaacaattgcaatagctgaagatgcaacaaccataaacaataaaaagcactag |
43454887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 354 - 422
Target Start/End: Original strand, 24419871 - 24419939
Alignment:
| Q |
354 |
caagcatcttcttaaccaagtctttggcactttcagaaatacttagccaaggatccgaagagaaatcaa |
422 |
Q |
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| T |
24419871 |
caagcatcttcttaaccaagtcttttgcactttcagagatactaggccatggatccgatgagaaatcaa |
24419939 |
T |
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