View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19457_low_5 (Length: 377)

Name: NF19457_low_5
Description: NF19457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19457_low_5
NF19457_low_5
[»] chr7 (5 HSPs)
chr7 (154-360)||(1078002-1078208)
chr7 (12-158)||(1078996-1079156)
chr7 (155-204)||(3927063-3927112)
chr7 (154-210)||(24723357-24723413)
chr7 (154-226)||(39298980-39299052)
[»] chr3 (30 HSPs)
chr3 (154-344)||(12133100-12133290)
chr3 (15-155)||(12132173-12132327)
chr3 (154-226)||(2442042-2442114)
chr3 (154-228)||(4142108-4142182)
chr3 (154-227)||(2696707-2696780)
chr3 (154-203)||(3754603-3754652)
chr3 (154-202)||(2492085-2492133)
chr3 (154-226)||(7942488-7942560)
chr3 (154-217)||(989399-989462)
chr3 (154-205)||(4157941-4157992)
chr3 (154-216)||(9608330-9608392)
chr3 (154-215)||(968674-968735)
chr3 (154-202)||(771499-771547)
chr3 (154-214)||(1940567-1940627)
chr3 (154-202)||(2456252-2456300)
chr3 (154-202)||(2644362-2644410)
chr3 (154-202)||(2659152-2659200)
chr3 (154-230)||(13498227-13498303)
chr3 (154-205)||(803215-803266)
chr3 (154-205)||(1007464-1007515)
chr3 (154-205)||(1022492-1022543)
chr3 (154-217)||(1931139-1931202)
chr3 (162-205)||(7432051-7432094)
chr3 (154-202)||(754609-754657)
chr3 (154-210)||(768321-768377)
chr3 (154-226)||(783775-783847)
chr3 (154-226)||(1891040-1891112)
chr3 (154-202)||(2631360-2631408)
chr3 (154-202)||(7324431-7324479)
chr3 (154-218)||(7398163-7398227)
[»] scaffold0044 (1 HSPs)
scaffold0044 (155-226)||(89147-89218)
[»] chr5 (4 HSPs)
chr5 (154-228)||(11081816-11081890)
chr5 (154-205)||(1427690-1427741)
chr5 (154-205)||(23766859-23766910)
chr5 (154-205)||(23816707-23816758)
[»] chr6 (3 HSPs)
chr6 (152-214)||(370773-370835)
chr6 (157-210)||(1442100-1442153)
chr6 (155-200)||(9819831-9819876)
[»] chr2 (5 HSPs)
chr2 (161-223)||(6538844-6538906)
chr2 (154-225)||(7156169-7156240)
chr2 (154-217)||(11237696-11237759)
chr2 (154-204)||(7160752-7160802)
chr2 (153-225)||(7168667-7168739)
[»] chr4 (1 HSPs)
chr4 (153-217)||(22672112-22672176)


Alignment Details
Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 154 - 360
Target Start/End: Complemental strand, 1078208 - 1078002
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatcctatatatagtgtatttggtgagccaa 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1078208 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatcctaaatatagtgtatttggtgagccaa 1078109  T
Q  254 tatatatttttgaggataatcaattgctgctcaagtttccaaggtatttaaatttgaagttgattcatttaaggaatggtacttttacatccactagatt 353  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||||    
T  1078108 tatatatttttgaggataatcaagtgctgctgaagtttccaaggtatttaaatttgaagttgattgattcaaggaatggtacttttacatctactggatt 1078009  T
Q  354 taataac 360  Q
    |||||||    
T  1078008 taataac 1078002  T

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Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 12 - 158
Target Start/End: Complemental strand, 1079156 - 1078996
Alignment:
Q  12 tcatcaaggaatcctttgcctaccctaacatcaccgccaccttcactc--------------actacacgacccgcctctgcccacccttccatttgacg 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||| ||||||||||||||||||||||||||||    
T  1079156 tcatcaaggaatcctttgcctaccctaacatcaccgccaccttcactctctttcggcaattcactacacgagccgcctctgcccacccttccatttgacg 1079057  T
Q  98 tcattccataaatcctttgctttctacctgtgaagttcctactccgctctcgatgcgtttg 158  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1079056 tcattccagaaatcctttgctttctacctgtgaagttcctactccggtctcgatgcgtttg 1078996  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 3927063 - 3927112
Alignment:
Q  155 tttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttc 204  Q
    |||||||||||||||| |||||||||| | | || |||||||||||||||    
T  3927063 tttgggttatgaaggattatggaaataaaaattcttggactaaattgttc 3927112  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 24723357 - 24723413
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtt 210  Q
    |||||| ||||||||||||||  |||||| || || ||||||||||||||| |||||    
T  24723357 gtttggcttatgaaggagtatataaatagtgaatcttggactaaattgttccatgtt 24723413  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 39298980 - 39299052
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatc 226  Q
    ||||||||| ||||||| | |||||||| |||||| ||||||||||| | || |||| |||||| || |||||    
T  39298980 gtttgggttttgaaggaatgtggaaataaagagtcctggactaaattttacagtgttccttacatggaagatc 39299052  T

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Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 154 - 344
Target Start/End: Original strand, 12133100 - 12133290
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatcctatatatagtgtatttggtgagccaa 253  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||| |||||||||||     
T  12133100 gtttgggttatgagggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttataggggagatcctatacttagtgtaattggtgagccat 12133199  T
Q  254 tatatatttttgaggataatcaattgctgctcaagtttccaaggtatttaaatttgaagttgattcatttaaggaatggtacttttacatc 344  Q
    |||||||||||||||||||| || ||||||| ||||||||  ||||||| |  |||||||||||| ||| ||| ||||||||| |||||||    
T  12133200 tatatatttttgaggataataaagtgctgctgaagtttcctgggtattttatattgaagttgattgattcaagtaatggtactattacatc 12133290  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 155
Target Start/End: Original strand, 12132173 - 12132327
Alignment:
Q  15 tcaaggaatcctttgcctaccctaacatcaccgccaccttcactcact--------------acacgacccgcctctgcccacccttccatttgacgtca 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||              |||||  ||||||||||| |||||||||||||||||||    
T  12132173 tcaaggaatcctttgcccaccctaacatcaccgccaccttcactctctttcggcaattcaatacacgcgccgcctctgcctacccttccatttgacgtca 12132272  T
Q  101 ttccataaatcctttgctttctacctgtgaagttcctactccgctctcgatgcgt 155  Q
    ||||| |||||||||| ||||||||||||||||| |||||||| |||||||||||    
T  12132273 ttccagaaatcctttgttttctacctgtgaagtttctactccggtctcgatgcgt 12132327  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 2442042 - 2442114
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatc 226  Q
    |||||| ||||||||||||||||||||| ||| || |||||||||||||||| | |||||| ||||| |||||    
T  2442042 gtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttcttgcagggtagatc 2442114  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 4142182 - 4142108
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatcct 228  Q
    |||||| |||||||||| |||||||||| |||||| |||||||||||||||| | || |||||| | ||||||||    
T  4142182 gtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatcct 4142108  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 2696780 - 2696707
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatcc 227  Q
    |||||| |||||||||| |||||||||| |||||| |||| ||||||||||| ||| ||||||| || ||||||    
T  2696780 gtttggattatgaaggaatatggaaataaagagtcttggattaaattgttcactgtatcttacatggaagatcc 2696707  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 3754603 - 3754652
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgtt 203  Q
    ||||||||||||||||| |||||||||| |||||| ||||||||||||||    
T  3754603 gtttgggttatgaaggaatatggaaataaagagtcttggactaaattgtt 3754652  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 2492085 - 2492133
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgt 202  Q
    |||||| |||||||||||||||||||| ||||||| |||||||||||||    
T  2492085 gtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 2492133  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 7942488 - 7942560
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatc 226  Q
    |||||| |||||||||||||||| |||| |||||| |||| |||||||| ||||||| |||||| || |||||    
T  7942488 gtttggattatgaaggagtatggtaataaagagtcttggattaaattgtacaatgttccttacatggaagatc 7942560  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 989399 - 989462
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttaca 217  Q
    |||||||| ||||| ||||| ||||||| |||||| |||||||||||||||| | |||||||||    
T  989399 gtttgggtaatgaaagagtacggaaataaagagtcttggactaaattgttcactatttcttaca 989462  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 4157992 - 4157941
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttca 205  Q
    |||||| |||||||||| |||||||||| |||||| ||||||||||||||||    
T  4157992 gtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttca 4157941  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 9608392 - 9608330
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttac 216  Q
    ||||||||||||||||| |||||||||| ||| || ||||||||||| | || ||||||||||    
T  9608392 gtttgggttatgaaggaatatggaaatatagattcttggactaaattatacagtgtttcttac 9608330  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 968674 - 968735
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttctta 215  Q
    |||||||||||||||||  ||||||||| |||||| ||||||||||| |||| | |||||||    
T  968674 gtttgggttatgaaggaacatggaaataaagagtcatggactaaattattcactatttctta 968735  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 771547 - 771499
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgt 202  Q
    ||||||||||||||||| |||||||||| ||| || |||||||||||||    
T  771547 gtttgggttatgaaggaatatggaaatacagactcttggactaaattgt 771499  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 1940627 - 1940567
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttctt 214  Q
    |||||||||||||||||  ||||||||  ||| ||||||||||||||||||| | ||||||    
T  1940627 gtttgggttatgaaggaacatggaaatcaagactcgtggactaaattgttcactatttctt 1940567  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 2456252 - 2456300
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgt 202  Q
    ||||||||||||||||| |||||||||| ||| || |||||||||||||    
T  2456252 gtttgggttatgaaggaatatggaaataaagactcttggactaaattgt 2456300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 2644410 - 2644362
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgt 202  Q
    |||||| ||||||||||||||||||||  |||||| |||||||||||||    
T  2644410 gtttggattatgaaggagtatggaaatcaagagtcttggactaaattgt 2644362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 2659200 - 2659152
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgt 202  Q
    |||||| ||||||||||||||||||||  |||||| |||||||||||||    
T  2659200 gtttggattatgaaggagtatggaaatcaagagtcttggactaaattgt 2659152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 13498227 - 13498303
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatcctat 230  Q
    |||||| |||||||||| |||||||||| |||||| ||||||||||| | |||| | ||||| | ||||| ||||||    
T  13498227 gtttggattatgaaggaatatggaaataaagagtcttggactaaattatacaatatctcttatatgggagttcctat 13498303  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 803266 - 803215
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttca 205  Q
    |||||||||||||| || |||||||||| |||||| |||||||| |||||||    
T  803266 gtttgggttatgaaagaatatggaaataaagagtcttggactaagttgttca 803215  T

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Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 1007464 - 1007515
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttca 205  Q
    |||||||| |||||||| ||||||||||  ||||| ||||||||||||||||    
T  1007464 gtttgggtaatgaaggaatatggaaataacgagtcctggactaaattgttca 1007515  T

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Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 1022492 - 1022543
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttca 205  Q
    |||||||| |||||||| ||||||||||  ||||| ||||||||||||||||    
T  1022492 gtttgggtaatgaaggaatatggaaataacgagtcatggactaaattgttca 1022543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 1931202 - 1931139
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttaca 217  Q
    ||||||||||||| |||  ||||||||| ||| || |||||||||||||||| | |||||||||    
T  1931202 gtttgggttatgatggaacatggaaataaagactcctggactaaattgttcactatttcttaca 1931139  T

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Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 7432094 - 7432051
Alignment:
Q  162 tatgaaggagtatggaaatagagagtcgtggactaaattgttca 205  Q
    ||||||||| |||||||||| ||| |||||||||||||||||||    
T  7432094 tatgaaggaatatggaaataaagaatcgtggactaaattgttca 7432051  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 754657 - 754609
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgt 202  Q
    |||||| ||||||||||||||||| ||  |||||| |||||||||||||    
T  754657 gtttggattatgaaggagtatggagatcaagagtcttggactaaattgt 754609  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 768377 - 768321
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtt 210  Q
    |||||| ||||||| ||||| ||||||  |||||| ||||||||||||||| |||||    
T  768377 gtttggattatgaatgagtacggaaatgaagagtcttggactaaattgttccatgtt 768321  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 783847 - 783775
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatc 226  Q
    |||||| |||||||||| |||||||||| | || | |||||||||||||  | |||| |||||| ||||||||    
T  783847 gtttggattatgaaggaatatggaaatacaaagccatggactaaattgtatactgttccttacatgggagatc 783775  T

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Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 1891112 - 1891040
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatc 226  Q
    |||||| ||||||||||  ||||||||| ||| || |||||||||||||  | ||||||||||| | ||||||    
T  1891112 gtttggattatgaaggaacatggaaataaagactcttggactaaattgtatagtgtttcttacatgcgagatc 1891040  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 2631360 - 2631408
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgt 202  Q
    |||||| |||||||||| |||||||||  |||||| |||||||||||||    
T  2631360 gtttggattatgaaggaatatggaaatcaagagtcttggactaaattgt 2631408  T

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Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 7324479 - 7324431
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgt 202  Q
    |||||| |||||||||| || ||||||| |||||| |||||||||||||    
T  7324479 gtttggattatgaaggactacggaaataaagagtcttggactaaattgt 7324431  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 7398227 - 7398163
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacag 218  Q
    |||||| | ||||||||||||||||||  |||||| |||| |||||||||   ||||||||||||    
T  7398227 gtttggttgatgaaggagtatggaaatgaagagtcttggattaaattgttttgtgtttcttacag 7398163  T

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Target: scaffold0044 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 89147 - 89218
Alignment:
Q  155 tttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatc 226  Q
    |||||||||||||||| |||||||||| |||||| ||||||||||||| ||||||| |||||| || |||||    
T  89147 tttgggttatgaaggaatatggaaataaagagtcttggactaaattgtacaatgttccttacatggaagatc 89218  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 11081816 - 11081890
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatcct 228  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||| | | || |||||| | ||||||||    
T  11081816 gtttgggttatgaaggagtatggaaataaagagtcttggactaaattgtttactattccttacatgagagatcct 11081890  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 1427741 - 1427690
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttca 205  Q
    |||||||||||||| ||||||||||||| |||||| |||| |||| ||||||    
T  1427741 gtttgggttatgaaagagtatggaaatacagagtcttggattaaactgttca 1427690  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 23766910 - 23766859
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttca 205  Q
    |||||| ||||||| || |||||||||| |||||| ||||||||||||||||    
T  23766910 gtttggattatgaaagaatatggaaataaagagtcttggactaaattgttca 23766859  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 23816758 - 23816707
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttca 205  Q
    |||||| ||||||| || |||||||||| |||||| ||||||||||||||||    
T  23816758 gtttggattatgaaagaatatggaaataaagagtcttggactaaattgttca 23816707  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 370835 - 370773
Alignment:
Q  152 gcgtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttctt 214  Q
    ||||||||||||||||| | |||||||||| ||| || |||||||||||||||||| ||||||    
T  370835 gcgtttgggttatgaagaattatggaaataaagattcttggactaaattgttcaatatttctt 370773  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 1442153 - 1442100
Alignment:
Q  157 tgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtt 210  Q
    |||||||||||||| ||||||| || ||| || |||||||||||||||| ||||    
T  1442153 tgggttatgaaggattatggaattaaagattcttggactaaattgttcactgtt 1442100  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 9819876 - 9819831
Alignment:
Q  155 tttgggttatgaaggagtatggaaatagagagtcgtggactaaatt 200  Q
    ||||| |||||||||| |||||||||||||| || |||||||||||    
T  9819876 tttggcttatgaaggaatatggaaatagagactcttggactaaatt 9819831  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 6538844 - 6538906
Alignment:
Q  161 ttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggag 223  Q
    ||||||||||||||||||||| ||| || |||||||||||||||| ||||||| ||| |||||    
T  6538844 ttatgaaggagtatggaaataaagattcttggactaaattgttcagtgtttctaacatgggag 6538906  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 7156240 - 7156169
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagat 225  Q
    |||||| ||||||||||||||||||||  ||| || ||| |||||||||||  |||| |||||| |||||||    
T  7156240 gtttggcttatgaaggagtatggaaatgaagattcttgggctaaattgttccgtgttccttacatgggagat 7156169  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 11237696 - 11237759
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttaca 217  Q
    |||||| ||||| |||||||||||||||||||  | |||||||||||||||  |||| ||||||    
T  11237696 gtttggcttatggaggagtatggaaatagagaaacttggactaaattgttccgtgttccttaca 11237759  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 7160802 - 7160752
Alignment:
Q  154 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttc 204  Q
    |||||| |||||||||||||||||||||  || || |||||||||||||||    
T  7160802 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 7160752  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 7168739 - 7168667
Alignment:
Q  153 cgtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagat 225  Q
    ||||||| |||||||||| ||||||||||  || || |||||||||||||||   ||| |||||| |||||||    
T  7168739 cgtttggcttatgaaggaatatggaaataacgattcttggactaaattgttccgagttccttacatgggagat 7168667  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 22672176 - 22672112
Alignment:
Q  153 cgtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttaca 217  Q
    ||||||||| |||||||| ||||||||||  || || |||||||||||||||| | |||||||||    
T  22672176 cgtttgggtaatgaaggaatatggaaataaggaatcttggactaaattgttcactatttcttaca 22672112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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