View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19457_low_6 (Length: 362)
Name: NF19457_low_6
Description: NF19457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19457_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 32 - 352
Target Start/End: Original strand, 13397532 - 13397854
Alignment:
| Q |
32 |
gcttgttcccacgtatgatcggagatcaaagactttatttt--ttcatggaaagcttccacttacttgcacatgtggtcatatgcttcgttatatgtagt |
129 |
Q |
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| T |
13397532 |
gcttgttcccacgtatgatcagagatcaaagactttattttttttcatggaaagcttccacttacttgcacatgtggtcatatgtttcgttatatgtagt |
13397631 |
T |
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| Q |
130 |
ttgctccttggttcaattaaatagttttgatgatgttcatttcttgaattaattagattatgtttttgtttagttgtagcttagttaccattgtaagaca |
229 |
Q |
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| T |
13397632 |
ttgctccttggttcaattaaatagttctgatgatgttcacttgttgaattaattagattatgtttttgtttagttgtaacttggttaccattgtaagaca |
13397731 |
T |
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| Q |
230 |
ttcgtagatcgttgtagaaacaagtttagttgtcatctcttttcagaatctcatatctcaagttttgattcgattcaaaattggtatacattctttgaat |
329 |
Q |
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| T |
13397732 |
ttcgtagatcattgtagcaacaagtttggttgtcatctcttttcagaatctcatatctcaagttttgattctattcaaaattggtatacattctttgaat |
13397831 |
T |
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| Q |
330 |
cgaagcacttttctatccctatg |
352 |
Q |
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| T |
13397832 |
cgaagcatttttctatccttatg |
13397854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 16117329 - 16117433
Alignment:
| Q |
123 |
atgtagtttgctccttggttcaattaaata-gttttgatgatgttcatttcttgaattaattagattatgtttttgtttagttgtagcttagttaccatt |
221 |
Q |
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| T |
16117329 |
atgtagtttgttcattggttcaattagataagttttgttgatatttattccttgacttgataagataatgtttttgtttggctatcgcttagttactatt |
16117428 |
T |
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| Q |
222 |
gtaag |
226 |
Q |
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||||| |
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| T |
16117429 |
gtaag |
16117433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 15784274 - 15784200
Alignment:
| Q |
149 |
aatagttttgatgatgttcatttcttgaattaattagattatgtttttgtttagttgtagcttagttaccattgt |
223 |
Q |
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|||||||||||||||||| | ||||| || |||||| ||||||||||||| ||| | ||||||||||||||| |
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| T |
15784274 |
aatagttttgatgatgttttctccttgatttgtttagataatgtttttgtttaattgcaacttagttaccattgt |
15784200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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