View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19457_low_8 (Length: 316)
Name: NF19457_low_8
Description: NF19457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19457_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 8 - 299
Target Start/End: Original strand, 39559220 - 39559511
Alignment:
| Q |
8 |
agcaaaggatgtaatccttacggcactttgtaaggtgattcgtacaggtagagaggttctaaacctatccaatctggtcagagctaacatttccaaaggt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39559220 |
agcaaaggatgtaatccttacggcactttgtaaggttattcgtacagctagagaggttctaaacctatccaatttggtcagagctaacatttccaaaggt |
39559319 |
T |
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| Q |
108 |
tccatcgagtttgattggctttataacgtgagccatctccgcatacgagagacctccccctgttatttacatggcatgtttcacaatttaacccatctgg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39559320 |
tccatcgagtttgattggctttataacgtgagccatctccgcatacgagagacctccccctgttatttacatggcatgtttcacaatttaacccatctgg |
39559419 |
T |
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| Q |
208 |
agcttatattagacttctgcgaactcgcctcgttcaagtggaactggctgatggaacaatttcaatatttccccaaacttcaaactcttatc |
299 |
Q |
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| T |
39559420 |
agcttatattagacttctgcgaactcgcctcgttcaagtggaactggctgatggaacaatttcaatatttccccaaacttcaaactcttatc |
39559511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 8 - 158
Target Start/End: Original strand, 50814829 - 50814979
Alignment:
| Q |
8 |
agcaaaggatgtaatccttacggcactttgtaaggtgattcgtacaggtagagaggttctaaacctatccaatctggtcagagctaacatttccaaaggt |
107 |
Q |
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||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
50814829 |
agcaaaggatgtaatagttacgagacgttgtatggtgattcgtacaggtagagaggttctaaacctatccaatttggtcagagctaacatttccaatggt |
50814928 |
T |
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| Q |
108 |
tccatcgagtttgattggctttataacgtgagccatctccgcatacgagag |
158 |
Q |
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| T |
50814929 |
ttacttgagtttgattggctttataacgtgaatcttctccgcatacaagag |
50814979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 50861035 - 50860885
Alignment:
| Q |
8 |
agcaaaggatgtaatccttacggcactttgtaaggtgattcgtacaggtagagaggttctaaacctatccaatctggtcagagctaacatttccaaaggt |
107 |
Q |
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||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
50861035 |
agcaaaggatgtaatagttacgagacgttgtatggtgattcgtacaggtagagaggttctaaacctatccaatttggtcagagctaacatttccaatggt |
50860936 |
T |
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| Q |
108 |
tccatcgagtttgattggctttataacgtgagccatctccgcatacgagag |
158 |
Q |
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| T |
50860935 |
ttacttgagtttgattggctttataacgtgaatcttctccgcatacaagag |
50860885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 299
Target Start/End: Complemental strand, 49868308 - 49868250
Alignment:
| Q |
241 |
tcaagtggaactggctgatggaacaatttcaatatttccccaaacttcaaactcttatc |
299 |
Q |
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||||||||||||||||||| |||| || || ||||||| |||||||||||||||||| |
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| T |
49868308 |
tcaagtggaactggctgattgaactgcttgaaaatttccctaaacttcaaactcttatc |
49868250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 49856999 - 49856951
Alignment:
| Q |
175 |
tacatggcatgtttcacaatttaacccatctggagcttatattagactt |
223 |
Q |
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||||| || ||||||||||||||||||| |||||||||| ||| ||||| |
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| T |
49856999 |
tacatagcgtgtttcacaatttaacccacctggagcttagattggactt |
49856951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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