View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19458_high_2 (Length: 408)
Name: NF19458_high_2
Description: NF19458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19458_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 20191664 - 20191279
Alignment:
| Q |
1 |
acacacttagttcggattgacatgtcaactttaatcaattacatattcaatcatatgactcgatcttcaatgttgcacatccataatcatgaatatttga |
100 |
Q |
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| T |
20191664 |
acacacttagttcggattgacatgtcaactttaatcaattacatattcaatcatatgactagatcttcaatattgcacatccataatcatgaatatttga |
20191565 |
T |
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| Q |
101 |
tcactttaatttcagcacattatatttagatattttgtcattttatgtcattaactcacatgttatgattttgtttgcagattaatcattttttattttg |
200 |
Q |
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| T |
20191564 |
tcactttaatttcaccacattatgtttaggtattttgtcattttatatcattaactcagatgttgtgattctgttcgcagattcatca-ttttcgttttg |
20191466 |
T |
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| Q |
201 |
agtggtgttgaatacgtgtttaatcttgatgtactttatcaaatgaatattactactccttgtattnnnnnnnnnnnnggaagaatataaactatattta |
300 |
Q |
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| T |
20191465 |
agtggtgttgaatacgtgtttcatcttgatatactttatcaaatgaa---taccactccttgtattaaaaaataaaaaggaagaatataaactatatttc |
20191369 |
T |
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| Q |
301 |
gtttattgtttggagtctcttcttatttctatggtacattcagagtcattttagtcaaccataaaataataaacttaacaacaatataag |
390 |
Q |
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| T |
20191368 |
ttttattgtttggagtctcttcttatttctatggtacattcagagtcatattagtcaaccataaaataataaacttaacaacaatataag |
20191279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 2352120 - 2352053
Alignment:
| Q |
10 |
gttcggattgacatgtcaactttaatcaattacatattcaatcatatgactcgatcttcaatgttgca |
77 |
Q |
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| T |
2352120 |
gttcagattgacatatcaacttcaatcaattacaaattaaatcaaataactagatcttcaatgttgca |
2352053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 12811613 - 12811553
Alignment:
| Q |
132 |
attttgtcattttatgtcattaactcacatgttatgattttgtttgcagattaatcatttt |
192 |
Q |
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| T |
12811613 |
attttgtcattttatgttattaacgtggatgttatgattttttttgtagattaatcatttt |
12811553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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