View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19458_low_1 (Length: 616)
Name: NF19458_low_1
Description: NF19458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19458_low_1 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] scaffold1572 (3 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 14 - 616
Target Start/End: Complemental strand, 21319379 - 21318773
Alignment:
| Q |
14 |
atatcagaagaacaaatacctccagcaattataaagagtcctatccaaaatctcagtagctataactgacaactttcaaattactctcccagctgcatgg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21319379 |
atatcagaagaacaaatacctccagcaattataaagagtcctatccaaaatctcagtagctataactggcaactttcaaattactctcccagctgcatgg |
21319280 |
T |
|
| Q |
114 |
actgaagtagcaaaaacagtacacatcagaaaggtttatacagaaaaatgaagtgcaaaaatatcagaaatcacagtaagttataaacaccgtaagttat |
213 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
21319279 |
actgaagtagcaaaaacagtacacgtcagaaaggtttatatagaaaaatgaagtgcaaaaatatcagaaatcacagtaagttataaacaacgtaagttat |
21319180 |
T |
|
| Q |
214 |
aactaatagcagaaaaccaaggcaggcatttgggttcaagcaccattgggctatgtgattcgagaaatagatgagacaccgtttcttctcctccacaatc |
313 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21319179 |
aactaatagcagaaaaccaagggaggcatttgggttcaagcaccattgggctatgtgattcaagaaatagatgagacaccgtttcttctcctccacaatt |
21319080 |
T |
|
| Q |
314 |
tccaacacagctaagcatcccttcactaatcactcctctcctatacaaattgtcttttgtagctatcctaatttaaagcattctccataccaacatagat |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21319079 |
tccaacacagctaagcatcccttcactaatcactcctctcctatacaaattgtcttttgtagctatcctaatttaaagcattctccataccaacatagat |
21318980 |
T |
|
| Q |
414 |
atctttgacgggatcgatttattccaagctcttgaccaagacggattacatg----tggcactcccaacattaaagccttgtaagcttccctggcgggat |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21318979 |
atctttgacgggatcgatttattccaagctcttgaccaagacggattacatgtgtttggcactcccaacattaaagccttgtaagcttccctggcgggat |
21318880 |
T |
|
| Q |
510 |
agatacttgttaatactccacctgtccaaacccatttgtctttctctaaatcattaaattccaccatttctaatctctctttaactcttctcaagacctt |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21318879 |
agatacttgttaatactccacctgtccaaacccatttgtctttctctaaatcattaaattccaccatttctaatctctccttaactcttctcaagacctt |
21318780 |
T |
|
| Q |
610 |
ttcctca |
616 |
Q |
| |
|
||||||| |
|
|
| T |
21318779 |
ttcctca |
21318773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1572 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: scaffold1572
Description:
Target: scaffold1572; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 216 - 440
Target Start/End: Original strand, 1044 - 1268
Alignment:
| Q |
216 |
ctaatagcagaaaaccaaggcaggcatttgggttcaagcaccattgggctatgtgattcgagaaatagatgagacaccgtttcttctcctccacaatctc |
315 |
Q |
| |
|
|||| ||||||||||||||||| ||| ||||||| ||||||||||||| ||||| | || | |||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
1044 |
ctaacagcagaaaaccaaggcaagcacttgggtttaagcaccattgggttatgtaactcaaaaaattgatgagacaccgttttttctcctccacaatctc |
1143 |
T |
|
| Q |
316 |
caacacagctaagcatcccttcactaatcactcctctcctatacaaattgtcttttgtagctatcctaatttaaagcattctccataccaacatagatat |
415 |
Q |
| |
|
|||||||| |||||||| ||| ||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1144 |
caacacagttaagcatctcttgactaatcactcctctaatatacaaatcatcttttgtagctatcctaatttgaagcattctccataccaacatagatat |
1243 |
T |
|
| Q |
416 |
ctttgacgggatcgatttattccaa |
440 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
1244 |
ctttgacgggatcgatttattccaa |
1268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1572; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 29 - 187
Target Start/End: Original strand, 844 - 998
Alignment:
| Q |
29 |
atacctccagcaattataaagagtcctatccaaaatctcagtagctataactgacaactttcaaattactctcccagctgcatggactgaagtagcaaaa |
128 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||| | || ||||| ||||||||||||||||| |
|
|
| T |
844 |
atacctccagcaat-atgaagagtcctatccaaaatctcagtagctataactaacaactttcaaattactcccacaactgcacggactgaagtagcaaaa |
942 |
T |
|
| Q |
129 |
acagtacacatcagaaaggtttatacagaaaaatgaagtgcaaaaatatcagaaatcac |
187 |
Q |
| |
|
|||||| || |||||| ||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
943 |
acagtatacgctagaaagatttatacagaaaagt---ttgcaaaaatatcagaaatcac |
998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1572; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 534 - 605
Target Start/End: Original strand, 1264 - 1336
Alignment:
| Q |
534 |
tccaaacccatttgtctttctctaaatcattaaattccaccatttct-aatctctctttaactcttctcaaga |
605 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1264 |
tccaaacccatttgcattcctctaaatcattaaattccaccatttctaaatctctctttaactcttctcaaga |
1336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 9e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 22 - 187
Target Start/End: Complemental strand, 37963959 - 37963803
Alignment:
| Q |
22 |
agaacaaatacctccagcaattataaagagtcctatccaaaatctcagtagctataactgacaactttcaaattactctcccagctgcatggactgaagt |
121 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
37963959 |
agaacaattacctccagcaattata--gagtcctatccaaaatctcagaagctataa-tgacaactttcaaattactcccccaactgcatggactgaagt |
37963863 |
T |
|
| Q |
122 |
agcaaaaacagtacacatcagaaaggtttatacagaaaaatgaagtgcaaaaatatcagaaatcac |
187 |
Q |
| |
|
||||||| ||||| ||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37963862 |
agcaaaa----tacacgccag--agatttatacagaaaaatgaagtgcaaaaatatcagaaatcac |
37963803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University