View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19458_low_2 (Length: 514)

Name: NF19458_low_2
Description: NF19458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19458_low_2
NF19458_low_2
[»] chr8 (4 HSPs)
chr8 (18-504)||(114729-115215)
chr8 (28-349)||(178585-178906)
chr8 (26-208)||(607258-607440)
chr8 (373-432)||(15907689-15907749)
[»] chr4 (2 HSPs)
chr4 (68-349)||(37437612-37437885)
chr4 (398-469)||(49668568-49668638)
[»] scaffold0209 (2 HSPs)
scaffold0209 (26-168)||(9466-9608)
scaffold0209 (26-168)||(22920-23062)
[»] chr2 (3 HSPs)
chr2 (404-475)||(8198656-8198727)
chr2 (404-475)||(8203416-8203487)
chr2 (392-432)||(4558697-4558738)
[»] chr1 (1 HSPs)
chr1 (407-486)||(26706352-26706432)
[»] chr7 (1 HSPs)
chr7 (406-475)||(18128528-18128598)
[»] chr6 (2 HSPs)
chr6 (450-487)||(16419660-16419697)
chr6 (450-487)||(33547811-33547848)
[»] chr5 (2 HSPs)
chr5 (450-487)||(13953520-13953557)
chr5 (404-487)||(38458803-38458885)
[»] chr3 (1 HSPs)
chr3 (443-487)||(9357887-9357931)


Alignment Details
Target: chr8 (Bit Score: 456; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 504
Target Start/End: Complemental strand, 115215 - 114729
Alignment:
Q  18 aagaagacgcagagttgctagttgagaaagaagtgattgtgcacgatctgggaagcaacgaggaattaacaagccttgttaacaatctatgcaaacatgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  115215 aagaagacgcagagttgctagttgagaaagaagtgattgtgcacgatctgggaagcaacgaggaattaacaagccttgttaacaatctatgcaaacatgt 115116  T
Q  118 tgtgacaaattcgtcgtgttattaccaacttatggaagatcttaatgaacactacaacagtgagtggaaaagggctatgggtacattaaggtgggtttat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  115115 tgtgacaaattcgtcgtgttattaccaacttatggaagatcttaatgaacactacaacagtgagtggaaaagggctatgggtacattaaggtgggtttat 115016  T
Q  218 tttcgtgatccttggagaagcagttctaccataattgggatagctgttctaatattcactatctttaactttcgtcgcgttgttggtctaatgttttagt 317  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  115015 tttcgtgatccttggagaagcagttctaccataatcgggatagttgttctaatattcactatctttaactttcgtcgcgttgttggtctaatgttttagt 114916  T
Q  318 tatttgaaaattatatgtattgaataactttttcctaatgtgttagaatgaaggttaaattacacctgaagttccttaagtaatttattgtaataaattg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  114915 tatttgaaaattatatgtattgaataactttttcctaatgtgttagaatgaaggttaaattacacctgaagttccttaagtaatttattgtaataaattg 114816  T
Q  418 gtctttaagtt-ttttcgtaactattagatccttttaagttaattaattgtaataagtttgtcatttaagtccctcttaggtcctttg 504  Q
    ||||||||||| ||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  114815 gtctttaagtttttttcataactattagat-catttaagttaattaattgtaataagtttgtcatttaagtccctcttaggtcctttg 114729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 28 - 349
Target Start/End: Original strand, 178585 - 178906
Alignment:
Q  28 agagttgctagttgagaaagaagtgattgtgcacgatctgggaagcaacgaggaattaacaagccttgttaacaatctatgcaaacatgttgtgacaaat 127  Q
    ||||| ||| |||||||||||| |  | |||||||| ||||||||| |||||||||| || |  ||||||||||  ||||||||||||||||||||||||    
T  178585 agagtggcttgttgagaaagaaattgtggtgcacgaactgggaagcgacgaggaattgacgacacttgttaacagcctatgcaaacatgttgtgacaaat 178684  T
Q  128 tcgtcgtgttattaccaacttatggaagatcttaatgaacactacaacagtgagtggaaaagggctatgggtacattaaggtgggtttattttcgtgatc 227  Q
    || || ||||||||||||||||| ||||||||||| ||||||||||||| ||| ||||||| |||||||||||||||||| ||||||||||| |||||||    
T  178685 tcatcatgttattaccaacttatagaagatcttaacgaacactacaacaatgaatggaaaaaggctatgggtacattaagatgggtttatttccgtgatc 178784  T
Q  228 cttggagaagcagttctaccataattgggatagctgttctaatattcactatctttaactttcgtcgcgttgttggtctaatgttttagttatttgaaaa 327  Q
    |||||||||||||||||||| || |||| ||| || ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||  | | | ||    
T  178785 cttggagaagcagttctaccgtagttggaataactattctaatattcactatcttcaactttcgtcgagttgttgatctaatgttttagtcctcttataa 178884  T
Q  328 ttatatgtattgaataactttt 349  Q
    ||||||||||||||| ||||||    
T  178885 ttatatgtattgaatcactttt 178906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 26 - 208
Target Start/End: Original strand, 607258 - 607440
Alignment:
Q  26 gcagagttgctagttgagaaagaagtgattgtgcacgatctgggaagcaacgaggaattaacaagccttgttaacaatctatgcaaacatgttgtgacaa 125  Q
    ||||||||| | |||||||||||  |||||||||| || || |||||| ||||||||||||| || ||||||| |||| ||| ||||||||||||||| |    
T  607258 gcagagttgttggttgagaaagatatgattgtgcatgaactaggaagccacgaggaattaacgagtcttgttatcaatttatccaaacatgttgtgacga 607357  T
Q  126 attcgtcgtgttattaccaacttatggaagatcttaatgaacactacaacagtgagtggaaaagggctatgggtacattaagg 208  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||| || |||||||||| ||||||||    
T  607358 attcatcgtgttattaccaacttatggaagatcttaatgaacactacaacagtggatggagaaaggctatgggtccattaagg 607440  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 432
Target Start/End: Original strand, 15907689 - 15907749
Alignment:
Q  373 taaattacacctgaagttccttaagtaattta-ttgtaataaattggtctttaagtttttt 432  Q
    ||||||||||| ||| | | |||||| ||||| |||| |||||||||||||||||||||||    
T  15907689 taaattacaccagaaatcctttaagttatttacttgtgataaattggtctttaagtttttt 15907749  T

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Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 68 - 349
Target Start/End: Complemental strand, 37437885 - 37437612
Alignment:
Q  68 ggaagcaacgaggaattaacaagccttgttaacaatctatgcaaacatgttgtgacaaattcgtcgtgttattaccaacttatggaagatcttaatgaac 167  Q
    |||||| || ||||||| ||||| ||  | ||||||||||||||| |||||||| | ||||| |||||||| || |||||| |||||||| ||||||| |    
T  37437885 ggaagccacaaggaattgacaagtctcatcaacaatctatgcaaatatgttgtggcgaattcatcgtgttactatcaacttgtggaagattttaatgacc 37437786  T
Q  168 actacaacagtgagtggaaaagggctatgggtacattaaggtgggtttattttcgtgatccttggagaagcagttctaccataattgggatagctgttct 267  Q
    ||| |||         ||||| |||||| ||||||||||| ||||||||    |||| |||||||||  | |||| ||| ||| ||||||||  ||||||    
T  37437785 actgcaat--------gaaaacggctattggtacattaagatgggtttacaaccgtgttccttggaggggtagttttactatagttgggataattgttct 37437694  T
Q  268 aatattcactatctttaactttcgtcgcgttgttggtctaatgttttagttatttgaaaattatatgtattgaataactttt 349  Q
    ||||||||||||||| |||||||| ||||| |||| ||||   ||||||||||| |||||||||||||||||||||||||||    
T  37437693 aatattcactatcttcaactttcgccgcgtcgttgatctagacttttagttattagaaaattatatgtattgaataactttt 37437612  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 469
Target Start/End: Complemental strand, 49668638 - 49668568
Alignment:
Q  398 taatttattgtaataaattggtctttaagttttttcgtaactattagatccttttaagttaattaattgtaa 469  Q
    ||||| ||||||||||||||||||||| ||||||  | | | ||||||| ||||||||||| ||||||||||    
T  49668638 taattaattgtaataaattggtctttatgtttttatgcaccaattagat-cttttaagttatttaattgtaa 49668568  T

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Target: scaffold0209 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 26 - 168
Target Start/End: Complemental strand, 9608 - 9466
Alignment:
Q  26 gcagagttgctagttgagaaagaagtgattgtgcacgatctgggaagcaacgaggaattaacaagccttgttaacaatctatgcaaacatgttgtgacaa 125  Q
    ||||||||| | || ||||||||||||||||||||||| || |||||  ||||||||||  | |  |||||||||  ||||||||||||| ||||||  |    
T  9608 gcagagttgttggtcgagaaagaagtgattgtgcacgaactaggaagtgacgaggaattggcgaatcttgttaacggtctatgcaaacatattgtgatga 9509  T
Q  126 attcgtcgtgttattaccaacttatggaagatcttaatgaaca 168  Q
    |||| |||||||||| |||||||||||| |||||| |||||||    
T  9508 attcatcgtgttatttccaacttatggaggatcttgatgaaca 9466  T

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Target: scaffold0209; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 26 - 168
Target Start/End: Complemental strand, 23062 - 22920
Alignment:
Q  26 gcagagttgctagttgagaaagaagtgattgtgcacgatctgggaagcaacgaggaattaacaagccttgttaacaatctatgcaaacatgttgtgacaa 125  Q
    ||||||||| | || ||||||||||||||||||||||| || |||||  ||||||||||  | |  |||||||||  ||||||||||||| ||||||  |    
T  23062 gcagagttgttggtcgagaaagaagtgattgtgcacgaactaggaagtgacgaggaattggcgaatcttgttaacggtctatgcaaacatattgtgatga 22963  T
Q  126 attcgtcgtgttattaccaacttatggaagatcttaatgaaca 168  Q
    |||| |||||||||| |||||||||||| |||||| |||||||    
T  22962 attcatcgtgttatttccaacttatggaggatcttgatgaaca 22920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 475
Target Start/End: Complemental strand, 8198727 - 8198656
Alignment:
Q  404 attgtaataaattggtctttaagtttttt-cgtaactattagatccttttaagttaattaattgtaataagtt 475  Q
    ||||||| ||||||||||||||||||||| |||| |  |||| ||| |||||| |||||||||||||||||||    
T  8198727 attgtaacaaattggtctttaagttttttccgtaccacttaggtcc-tttaagataattaattgtaataagtt 8198656  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 475
Target Start/End: Complemental strand, 8203487 - 8203416
Alignment:
Q  404 attgtaataaattggtctttaagtttttt-cgtaactattagatccttttaagttaattaattgtaataagtt 475  Q
    ||||||| ||||||||||||||||||||| |||| |  |||| ||| |||||| |||||||||||||||||||    
T  8203487 attgtaacaaattggtctttaagttttttccgtaccacttaggtcc-tttaagataattaattgtaataagtt 8203416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 432
Target Start/End: Original strand, 4558697 - 4558738
Alignment:
Q  392 cttaagtaattta-ttgtaataaattggtctttaagtttttt 432  Q
    ||||||| ||||| ||||||||||||||||||||||||||||    
T  4558697 cttaagttatttaattgtaataaattggtctttaagtttttt 4558738  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 486
Target Start/End: Complemental strand, 26706432 - 26706352
Alignment:
Q  407 gtaataaattggt-ctttaagttttttcgtaactattagatccttttaagttaattaattgtaataagtttgtcatttaag 486  Q
    ||||||||||| | ||||||||||||||||| |  |||  |||||||||||||||||||| | | ||||||||| ||||||    
T  26706432 gtaataaattgattctttaagttttttcgtatcatttaagtccttttaagttaattaattattacaagtttgtcctttaag 26706352  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 475
Target Start/End: Complemental strand, 18128598 - 18128528
Alignment:
Q  406 tgtaataaattggtc--tttaagttttttcgtaacta-ttagatccttttaagttaattaattgtaataagtt 475  Q
    |||||||||||||||  ||||||||||||||| |||| |||| | | ||||||||||||||||||||||||||    
T  18128598 tgtaataaattggtccttttaagttttttcgt-actacttaggttc-tttaagttaattaattgtaataagtt 18128528  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 487
Target Start/End: Original strand, 16419660 - 16419697
Alignment:
Q  450 tttaagttaattaattgtaataagtttgtcatttaagt 487  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  16419660 tttaagttaattaattgtaacaagttggtcatttaagt 16419697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 487
Target Start/End: Original strand, 33547811 - 33547848
Alignment:
Q  450 tttaagttaattaattgtaataagtttgtcatttaagt 487  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  33547811 tttaagttaattaattgtaacaagtttgtcttttaagt 33547848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 487
Target Start/End: Complemental strand, 13953557 - 13953520
Alignment:
Q  450 tttaagttaattaattgtaataagtttgtcatttaagt 487  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  13953557 tttaagttaattaattgtaacaagtttgtcttttaagt 13953520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 487
Target Start/End: Complemental strand, 38458885 - 38458803
Alignment:
Q  404 attgtaataaattggtctttaagtttttt-cgtaactattagatccttttaagttaattaattgtaataagtttgtcatttaagt 487  Q
    ||||||||||||| || |||||||||||| |||| |  ||| ||| |||||||||| || ||||||||||||| |||||||||||    
T  38458885 attgtaataaattagt-tttaagtttttttcgtaccacttatatc-ttttaagttattttattgtaataagttagtcatttaagt 38458803  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 487
Target Start/End: Complemental strand, 9357931 - 9357887
Alignment:
Q  443 agatccttttaagttaattaattgtaataagtttgtcatttaagt 487  Q
    |||||||||||||||| |||||| ||||||||| ||| |||||||    
T  9357931 agatccttttaagttatttaattataataagttggtcctttaagt 9357887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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