View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19458_low_4 (Length: 325)

Name: NF19458_low_4
Description: NF19458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19458_low_4
NF19458_low_4
[»] chr8 (11 HSPs)
chr8 (91-310)||(5662583-5662802)
chr8 (7-84)||(5657674-5657751)
chr8 (77-214)||(27541539-27541676)
chr8 (77-214)||(14678001-14678139)
chr8 (77-214)||(5657774-5657912)
chr8 (77-214)||(31100852-31100990)
chr8 (72-132)||(24788096-24788156)
chr8 (77-217)||(8158464-8158604)
chr8 (77-132)||(23738660-23738715)
chr8 (72-128)||(24787162-24787220)
chr8 (77-127)||(33689362-33689412)
[»] chr5 (8 HSPs)
chr5 (80-239)||(22004412-22004571)
chr5 (77-214)||(22009508-22009646)
chr5 (77-214)||(9043805-9043943)
chr5 (80-214)||(30442527-30442662)
chr5 (77-214)||(7473469-7473607)
chr5 (77-132)||(19085440-19085495)
chr5 (77-238)||(30463006-30463169)
chr5 (97-132)||(26841027-26841062)
[»] chr2 (7 HSPs)
chr2 (77-227)||(24454518-24454668)
chr2 (77-214)||(23348960-23349098)
chr2 (75-214)||(12741687-12741829)
chr2 (77-214)||(10328871-10329010)
chr2 (77-214)||(18355293-18355431)
chr2 (136-212)||(997882-997958)
chr2 (161-210)||(1615899-1615948)
[»] scaffold0096 (1 HSPs)
scaffold0096 (72-233)||(27408-27569)
[»] chr3 (17 HSPs)
chr3 (81-198)||(47763911-47764028)
chr3 (77-239)||(24761853-24762016)
chr3 (77-214)||(2549940-2550077)
chr3 (77-238)||(24815918-24816080)
chr3 (77-214)||(31685080-31685218)
chr3 (77-212)||(17681770-17681905)
chr3 (77-233)||(12538597-12538753)
chr3 (77-214)||(53973266-53973404)
chr3 (72-214)||(37982347-37982490)
chr3 (77-239)||(53352716-53352879)
chr3 (81-214)||(19882091-19882225)
chr3 (239-310)||(31688029-31688100)
chr3 (77-233)||(53027713-53027870)
chr3 (239-310)||(31896767-31896838)
chr3 (239-310)||(31912476-31912547)
chr3 (239-310)||(31946124-31946195)
chr3 (121-173)||(53351956-53352008)
[»] chr7 (4 HSPs)
chr7 (70-214)||(1262084-1262229)
chr7 (77-214)||(43071362-43071500)
chr7 (77-214)||(26909961-26910099)
chr7 (77-214)||(48849787-48849925)
[»] scaffold0035 (1 HSPs)
scaffold0035 (66-214)||(35055-35204)
[»] scaffold0045 (1 HSPs)
scaffold0045 (77-214)||(11614-11752)
[»] chr6 (8 HSPs)
chr6 (81-214)||(33045411-33045545)
chr6 (77-183)||(3065701-3065807)
chr6 (77-202)||(10092515-10092641)
chr6 (81-240)||(8976411-8976571)
chr6 (72-132)||(16246700-16246760)
chr6 (77-132)||(4660238-4660293)
chr6 (81-128)||(30908436-30908483)
chr6 (239-310)||(27444274-27444346)
[»] chr4 (5 HSPs)
chr4 (77-214)||(29863341-29863479)
chr4 (77-149)||(12506439-12506511)
chr4 (75-106)||(10195654-10195685)
chr4 (97-132)||(24260243-24260278)
chr4 (104-149)||(38014371-38014415)
[»] scaffold0003 (2 HSPs)
scaffold0003 (239-310)||(36832-36903)
scaffold0003 (239-310)||(43015-43087)
[»] scaffold0596 (1 HSPs)
scaffold0596 (77-214)||(657-795)
[»] scaffold0157 (1 HSPs)
scaffold0157 (77-149)||(13966-14038)
[»] chr1 (4 HSPs)
chr1 (72-238)||(25223217-25223385)
chr1 (239-305)||(7608113-7608179)
chr1 (78-132)||(50990911-50990965)
chr1 (239-305)||(31771101-31771167)
[»] scaffold0475 (1 HSPs)
scaffold0475 (97-132)||(7536-7571)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 91 - 310
Target Start/End: Original strand, 5662583 - 5662802
Alignment:
Q  91 tcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcatcatttggctaggcattc 190  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5662583 tcctaattaatattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcatcatttggctaggcattc 5662682  T
Q  191 atctcatcctttgatttaatctgacttctaactttcatttccccatgccacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgt 290  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5662683 atctcatcctttgatttaatctgacttcaaactttcatttccccatgccacaattcaaattcaagtttaccgtgcattgtaaatgacaaacaattaatgt 5662782  T
Q  291 taactgtttccaatacagtg 310  Q
    ||||||||||||||||||||    
T  5662783 taactgtttccaatacagtg 5662802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 5657674 - 5657751
Alignment:
Q  7 gtgagctaggttaactttcattcactttatcactaattaagcatgacaaaaatttccttattatgaaattatacttat 84  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5657674 gtgagctaggttaattttcattcactttatcactaattaagcatgacaaaaatttccttattatgaaatcatacttat 5657751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 27541676 - 27541539
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcatcat 176  Q
    |||||||||||||||| |  |||||||||||||||||||||||||||||||||||| ||   || ||| |||| |||||    ||||| |||||||||||    
T  27541676 atacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggctttggctccaaacaagggacgccgttggatctcatcat 27541577  T
Q  177 ttggctaggcattcatctcatcctttgatttaatctga 214  Q
    ||||||| |||| |||||||||||||||| ||||||||    
T  27541576 ttggctaagcatgcatctcatcctttgatctaatctga 27541539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 14678139 - 14678001
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctcatca 175  Q
    |||||||||||||||| |  ||||||||||||||||||||| |||||||||||||| ||  ||| ||| || || |||||  | ||||| ||||||||||    
T  14678139 atacttatatctaatctttgttaacattgctaatgactttgaaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatca 14678040  T
Q  176 tttggctaggcattcatctcatcctttgatttaatctga 214  Q
    |||||||| |||| |||||||||||||||| ||||||||    
T  14678039 tttggctaagcatgcatctcatcctttgatctaatctga 14678001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 77 - 214
Target Start/End: Original strand, 5657774 - 5657912
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctcatca 175  Q
    |||||||||||||||| |  ||||| |||||||||||||||||||||||||||||| ||  ||| ||| || || |||||  | ||||| ||||||||||    
T  5657774 atacttatatctaatctttgttaacgttgctaatgactttgcaaaccctaaacctaaatagttttggctccaaaacaagggaggccgttggatctcatca 5657873  T
Q  176 tttggctaggcattcatctcatcctttgatttaatctga 214  Q
    ||||| || |||| |||||||||||||||| ||||||||    
T  5657874 tttggttaagcatgcatctcatcctttgatctaatctga 5657912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 31100990 - 31100852
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctcatca 175  Q
    |||||||||||||||| |  ||||||||||||||||||||||||| |||||||||| ||  ||| ||| || || |||||  | ||||| ||||||||||    
T  31100990 atacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaatggttttggctccaaaacaagggaggccgttcgatctcatca 31100891  T
Q  176 tttggctaggcattcatctcatcctttgatttaatctga 214  Q
    ||||| || ||||  ||||||||||||||| ||||||||    
T  31100890 tttggttaagcatgtatctcatcctttgatctaatctga 31100852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 24788156 - 24788096
Alignment:
Q  72 aaattatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaaccta 132  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24788156 aaatcatacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaaccta 24788096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 217
Target Start/End: Original strand, 8158464 - 8158604
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcatcat 176  Q
    |||||||||||||||  |  |||||| ||||||| || ||||||| ||||||||||  | |||| ||||||||| ||| ||| ||||| ||||  || |     
T  8158464 atacttatatctaatttttgttaacaatgctaattaccttgcaaaacctaaacctaagtattttgggcgccaattaagcagggccgtttgatcaaatgag 8158563  T
Q  177 ttggctaggcattcatctcatcctttgatttaatctgactt 217  Q
     | ||||  |||||||||||||||||||| |||||||||||    
T  8158564 ctagctaatcattcatctcatcctttgatctaatctgactt 8158604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 23738660 - 23738715
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaaccta 132  Q
    |||||||||||||||| |  ||||||||||||||||||||||||||||||| ||||    
T  23738660 atacttatatctaatctttgttaacattgctaatgactttgcaaaccctaacccta 23738715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 24787220 - 24787162
Alignment:
Q  72 aaattatacttatatctaatccta--attaacattgctaatgactttgcaaaccctaaa 128  Q
    |||| |||||||||||||||| ||  |||||||||||||||||||||||||| ||||||    
T  24787220 aaatcatacttatatctaatcttataattaacattgctaatgactttgcaaatcctaaa 24787162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 33689412 - 33689362
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaa 127  Q
    |||| ||||||||||| |  ||||||||||||||||||||||| |||||||    
T  33689412 atacctatatctaatctttgttaacattgctaatgactttgcagaccctaa 33689362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 80 - 239
Target Start/End: Complemental strand, 22004571 - 22004412
Alignment:
Q  80 cttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcatcatttg 179  Q
    ||||||||||||| |  |||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||| |||||||| ||||||||||||||    
T  22004571 cttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctagatagtttaggcgccaatcaaggtggtccgttggatctcatcatttg 22004472  T
Q  180 gctaggcattcatctcatcctttgatttaatctgacttctaactttcatttccccatgcc 239  Q
    |||  |||||||| |||||||||||| |||| | ||||| || |||||||||||||||||    
T  22004471 gctcagcattcatatcatcctttgatctaatgtcacttcaaagtttcatttccccatgcc 22004412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 22009646 - 22009508
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctcatca 175  Q
    |||||||||||||||| |  |||||||||||||||| ||||||||||||||||||| ||  ||| ||| || || |||||  | ||||| ||||||||||    
T  22009646 atacttatatctaatctttgttaacattgctaatgaatttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatca 22009547  T
Q  176 tttggctaggcattcatctcatcctttgatttaatctga 214  Q
    |||||||| |||| |||||||||||||||| ||||||||    
T  22009546 tttggctaagcatgcatctcatcctttgatctaatctga 22009508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 77 - 214
Target Start/End: Original strand, 9043805 - 9043943
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaat-caaggaggtccgttagatctcatca 175  Q
    |||||||||||||||| |  ||||||||||||||||  |||||||||||||||||| ||  ||| ||| ||||  |||||  | ||||| ||||||||||    
T  9043805 atacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatca 9043904  T
Q  176 tttggctaggcattcatctcatcctttgatttaatctga 214  Q
    |||||||| |||| |||||||||||||||| ||||||||    
T  9043905 tttggctaagcatgcatctcatcctttgatctaatctga 9043943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 80 - 214
Target Start/End: Complemental strand, 30442662 - 30442527
Alignment:
Q  80 cttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaat-caaggaggtccgttagatctcatcattt 178  Q
    ||||||||||||| |  ||||||||||||||||  |||||||||||||||||| ||  ||| ||| ||||  |||||  | ||||| |||||||||||||    
T  30442662 cttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcattt 30442563  T
Q  179 ggctaggcattcatctcatcctttgatttaatctga 214  Q
    ||||| |||| |||||||||||||||| ||||||||    
T  30442562 ggctaagcatgcatctcatcctttgatctaatctga 30442527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 7473607 - 7473469
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctcatca 175  Q
    |||||||||||||||| |  ||||||||||||||||  |||||||||||||||||| ||  ||| ||| || || |||||  | ||||| ||||||||||    
T  7473607 atacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatca 7473508  T
Q  176 tttggctaggcattcatctcatcctttgatttaatctga 214  Q
    ||| |||| |||| |||||||||||||||| ||||||||    
T  7473507 tttagctaagcatgcatctcatcctttgatctaatctga 7473469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 19085495 - 19085440
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaaccta 132  Q
    |||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||    
T  19085495 atacttatatataatctttgttaacattgctaatgactttgcaaaccctaaaccta 19085440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 238
Target Start/End: Complemental strand, 30463169 - 30463006
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaa-ccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcatca 175  Q
    |||||||||||||||| |  |||||| ||||||| || ||||||| ||||||||||||   |||| ||||||||| ||||||  ||||| ||||  || |    
T  30463169 atacttatatctaatctttgttaacaatgctaattaccttgcaaaaccctaaacctagccattttgggcgccaattaaggagagccgtttgatcaaatga 30463070  T
Q  176 tttggctaggcattcatctcatcctttgatttaatctgacttctaactttca-tttccccatgc 238  Q
      | |||| ||||||||||||||||||||| | || ||||||   ||||||| |||||||||||    
T  30463069 gctagctaagcattcatctcatcctttgatctcatttgacttggcactttcagtttccccatgc 30463006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 132
Target Start/End: Complemental strand, 26841062 - 26841027
Alignment:
Q  97 ttaacattgctaatgactttgcaaaccctaaaccta 132  Q
    |||||||||||||||| |||||||||||||||||||    
T  26841062 ttaacattgctaatgattttgcaaaccctaaaccta 26841027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 77 - 227
Target Start/End: Original strand, 24454518 - 24454668
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcatcat 176  Q
    |||||||||||||||| ||||||||||||||||   | ||||||| |||||||||| |||||||||||||||| |||||||| ||||| |||||||||||    
T  24454518 atacttatatctaatcttaattaacattgctaagaccattgcaaatcctaaacctaaattttttaggcgccaaacaaggagggccgttggatctcatcat 24454617  T
Q  177 ttggctaggcattcatctcatcctttgatttaatctgacttctaactttca 227  Q
    |||||| | |||||||||||||||||||| |||||||||||| ||||||||    
T  24454618 ttggcttgacattcatctcatcctttgatctaatctgacttcaaactttca 24454668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 23349098 - 23348960
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaat-caaggaggtccgttagatctcatca 175  Q
    |||||||||||||||| |  ||||||||||||||||  |||||||||||||||||| ||  ||| ||| ||||  |||||  | ||||| ||||||||||    
T  23349098 atacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatca 23348999  T
Q  176 tttggctaggcattcatctcatcctttgatttaatctga 214  Q
    |||||||| |||| |||||||||||||||| ||||||||    
T  23348998 tttggctaagcatgcatctcatcctttgatctaatctga 23348960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 214
Target Start/End: Original strand, 12741687 - 12741829
Alignment:
Q  75 ttatacttata--tctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatc--aaggaggtccgttagatct 170  Q
    |||||||||||  ||||||| |  ||||||||||||||||  |||||||||||||||||| ||  ||| ||| ||||    ||||||| ||||| |||||    
T  12741687 ttatacttatacatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaaaggagg-ccgttggatct 12741785  T
Q  171 catcatttggctaggcattcatctcatcctttgatttaatctga 214  Q
    ||||||||||||| |||| |||||||||||||||| ||||||||    
T  12741786 catcatttggctaagcatgcatctcatcctttgatctaatctga 12741829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 10329010 - 10328871
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgc-caatcaaggaggtccgttagatctcatca 175  Q
    |||||||||||||||| |  ||||||||||||||||  |||||||||||||||||| ||| ||| ||  |  || |||||  | ||||| ||||||||||    
T  10329010 atacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaattgttttggttctaaaacaagggaggccgttggatctcatca 10328911  T
Q  176 tttggctaggcattcatctcatcc-tttgatttaatctga 214  Q
    |||||||| |||| |||||||||| |||||| ||||||||    
T  10328910 tttggctaagcatgcatctcatccttttgatctaatctga 10328871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 18355431 - 18355293
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaat-caagg-aggtccgttagatctcatc 174  Q
    |||||||||| ||||| |  ||||||||||||||||  |||||||||||||||||| ||  ||| ||| ||||  ||||| ||||| ||| |||||||||    
T  18355431 atacttatatttaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggtc-gttggatctcatc 18355333  T
Q  175 atttggctaggcattcatctcatcctttgatttaatctga 214  Q
    ||||||||| |||| ||||||||||||| || ||||||||    
T  18355332 atttggctaagcatgcatctcatcctttaatctaatctga 18355293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 997882 - 997958
Alignment:
Q  136 tttttaggcgccaatcaaggaggtccgttagatctcatcatttggctaggcattcatctcatcctttgatttaatct 212  Q
    ||||||||||||||| ||||| | ||||| ||||  ||||| || ||| |||||||||||||||||| || ||||||    
T  997882 tttttaggcgccaattaaggatggccgtttgatcaaatcatctgactaagcattcatctcatcctttcatctaatct 997958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 1615948 - 1615899
Alignment:
Q  161 cgttagatctcatcatttggctaggcattcatctcatcctttgatttaat 210  Q
    |||| |||| ||||||||||||| |||| |||||||||||||||| ||||    
T  1615948 cgttggatcgcatcatttggctaagcatgcatctcatcctttgatctaat 1615899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 72 - 233
Target Start/End: Original strand, 27408 - 27569
Alignment:
Q  72 aaattatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctc 171  Q
    |||| |||||||||||||||| |  |||||||||||||||| ||||||||||||||||||| ||  ||| ||| |||| |||||  | ||||| ||||||    
T  27408 aaatcatacttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctc 27507  T
Q  172 atcatttggctaggcattcatctcatcctttgatttaatctgacttctaactttcatttccc 233  Q
    |||||||||||| |||| |||||||||||||||| |||| ||||||| ||||||||||||||    
T  27508 atcatttggctaagcatgcatctcatcctttgatctaatttgacttcaaactttcatttccc 27569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 81 - 198
Target Start/End: Complemental strand, 47764028 - 47763911
Alignment:
Q  81 ttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcatcatttgg 180  Q
    ||||||||||||||| |||||||||||||| |||||||||| |||||| ||||| ||||||||||||||||||||||||||||| ||||  ||||| |||    
T  47764028 ttatatctaatcctacttaacattgctaataactttgcaaaacctaaatctagaatttttaggcgccaatcaaggaggtccgttggatcaaatcatctgg 47763929  T
Q  181 ctaggcattcatctcatc 198  Q
    ||||||||||||||||||    
T  47763928 ctaggcattcatctcatc 47763911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 77 - 239
Target Start/End: Complemental strand, 24762016 - 24761853
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaat-caaggaggtccgttagatctcatca 175  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||  ||| ||| ||||  ||| |  | ||||| ||||||||||    
T  24762016 atacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaatgctgaccgttggatctcatca 24761917  T
Q  176 tttggctaggcattcatctcatcctttgatttaatctgacttctaactttcatttccccatgcc 239  Q
    |||||||  |||| |||||||||||||||| |||| ||||||| |||||| |||||||||||||    
T  24761916 tttggctcagcatgcatctcatcctttgatctaatttgacttcaaacttttatttccccatgcc 24761853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 77 - 214
Target Start/End: Original strand, 2549940 - 2550077
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctcatca 175  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||  ||| ||| || || |||||  | ||||| ||||| ||||    
T  2549940 atacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaacctaaatgattttggctccaaaacaagggaggccgttggatct-atca 2550038  T
Q  176 tttggctaggcattcatctcatcctttgatttaatctga 214  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  2550039 tttggctaagcatgcatctcatcctttgatttaatctga 2550077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 77 - 238
Target Start/End: Original strand, 24815918 - 24816080
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctcatca 175  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||  ||| ||| || || | | |  | ||||| ||||||||||    
T  24815918 atacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctggccgttggatctcatca 24816017  T
Q  176 tttggctaggcattcatctcatcctttgatttaatctgacttctaactttcatttccccatgc 238  Q
    |||||||  |||| |||||||||||||||| |||| ||||||| |||||| ||||||||||||    
T  24816018 tttggctcagcatgcatctcatcctttgatctaatttgacttcaaacttttatttccccatgc 24816080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 77 - 214
Target Start/End: Original strand, 31685080 - 31685218
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc--aatcaaggaggtccgttagatctcatc 174  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||  ||| ||| ||  ||| | ||||| |||||  ||||||||    
T  31685080 atacttatatctaatctttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggagg-ccgttgaatctcatc 31685178  T
Q  175 atttggctaggcattcatctcatcctttgatttaatctga 214  Q
    ||||||||| |||| |||||||||||||||| ||||||||    
T  31685179 atttggctaagcatgcatctcatcctttgatctaatctga 31685218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 17681770 - 17681905
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcatcat 176  Q
    |||||||||||||||| |  ||||||||| |||||| ||||||||||||||||||| ||  ||| ||| |||| ||||| || ||||| |||||||||||    
T  17681770 atacttatatctaatctttgttaacattgttaatgattttgcaaaccctaaacctaaatggttttggctccaaacaaggggggccgttggatctcatcat 17681869  T
Q  177 ttggctaggcattcatctcatcctttgatttaatct 212  Q
    |||| || |||| |||||||||||||||| ||||||    
T  17681870 ttggttaagcatgcatctcatcctttgatctaatct 17681905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 77 - 233
Target Start/End: Complemental strand, 12538753 - 12538597
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcatcat 176  Q
    |||||||||||||||| |  ||||| || ||||||| ||||||||||||||||||| ||  ||| ||| |||| |||||  | ||||| |||||||||||    
T  12538753 atacttatatctaatctttgttaacctttctaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctcatcat 12538654  T
Q  177 ttggctaggcattcatctcatcctttgatttaatctgacttctaactttcatttccc 233  Q
    ||||||| |||| |||| ||||||||||| |||| | ||||| |||||||| |||||    
T  12538653 ttggctaagcatgcatcacatcctttgatctaatttaacttcaaactttcaattccc 12538597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 53973404 - 53973266
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctcatca 175  Q
    |||||||||||||||| |  ||||||||||||||||  |||||||||||||||||| ||  ||| ||| || ||||||||  | ||||| ||||||||||    
T  53973404 atacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaatcaagggaggccgttggatctcatca 53973305  T
Q  176 tttggctaggcattcatctcatcctttgatttaatctga 214  Q
    |||||||| || | |||||||||||||||| ||||||||    
T  53973304 tttggctaagcctgcatctcatcctttgatctaatctga 53973266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 72 - 214
Target Start/End: Original strand, 37982347 - 37982490
Alignment:
Q  72 aaattatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatct 170  Q
    |||| |||||||||||||||| |  ||||||||||||||||  |||||||||||||||||| ||  ||| ||| || || |||||  | ||||| |||||    
T  37982347 aaatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatct 37982446  T
Q  171 catcatttggctaggcattcatctcatcctttgatttaatctga 214  Q
    ||||||||||||| |||| ||||||||||||| || ||||||||    
T  37982447 catcatttggctaagcatgcatctcatcctttaatctaatctga 37982490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 239
Target Start/End: Complemental strand, 53352879 - 53352716
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctcatca 175  Q
    ||||||||||||||||||  |||||||||||||||||||||||||| ||||||||| |   ||| ||| || || | | |  | ||||| ||||||||||    
T  53352879 atacttatatctaatccttcttaacattgctaatgactttgcaaactctaaacctaaacggttttggctccaaaacgatgctgaccgttggatctcatca 53352780  T
Q  176 tttggctaggcattcatctcatcctttgatttaatctgacttctaactttcatttccccatgcc 239  Q
    |||||||  |  | ||||||||||||||||||||| ||||||| |||||| |||||| ||||||    
T  53352779 tttggctcagtgtgcatctcatcctttgatttaatttgacttcaaacttttatttcctcatgcc 53352716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 81 - 214
Target Start/End: Complemental strand, 19882225 - 19882091
Alignment:
Q  81 ttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaat-caaggaggtccgttagatctcatcatttg 179  Q
    |||||||||||| |  ||||||||||||||||  ||| |||||||||||||| ||  ||| ||| ||||  |||||  | ||||| ||||||||||||||    
T  19882225 ttatatctaatctttgttaacattgctaatgaaattgtaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcatcatttg 19882126  T
Q  180 gctaggcattcatctcatcctttgatttaatctga 214  Q
    |||| |||| |||||||||||||||| ||||||||    
T  19882125 gctaagcatgcatctcatcctttgatctaatctga 19882091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 31688029 - 31688100
Alignment:
Q  239 cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaatacagtg 310  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| | |||||||||| ||||    
T  31688029 cacaattcaaattcaagtttacggtgcattgtaaatgacaaataattaatgttatcggtttccaataaagtg 31688100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 77 - 233
Target Start/End: Complemental strand, 53027870 - 53027713
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggt---ccgttagatctcat 173  Q
    ||||||||||||||||||  |||||| ||||||| ||||| ||||||||||||||| ||  ||| | | ||||  || || |    ||||| ||||||||    
T  53027870 atacttatatctaatccttcttaacactgctaataactttacaaaccctaaacctaaatggttttgactccaa--aatgatgctgaccgttggatctcat 53027773  T
Q  174 catttggctaggcattcatctcatcctttgatttaatctgacttctaactttcatttccc 233  Q
    |||||||||  |||| |||||||||||||||| |||| ||||||| |||||| |||||||    
T  53027772 catttggctcagcatgcatctcatcctttgatctaatttgacttcaaacttttatttccc 53027713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 31896838 - 31896767
Alignment:
Q  239 cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaatacagtg 310  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| |  ||||||||| ||||    
T  31896838 cacaattcaaattcaagtttactgtgcattgtaaatgacaaataattaatgttatcgatttccaataaagtg 31896767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 31912547 - 31912476
Alignment:
Q  239 cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaatacagtg 310  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| |  ||||||||| ||||    
T  31912547 cacaattcaaattcaagtttactgtgcattgtaaatgacaaataattaatgttatcgatttccaataaagtg 31912476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 31946195 - 31946124
Alignment:
Q  239 cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaatacagtg 310  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||| ||||||| |  ||||||||| ||||    
T  31946195 cacaattcaaattcaagtttactgtgcattgtaaatgacaaataatgaatgttatcgatttccaataaagtg 31946124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 53352008 - 53351956
Alignment:
Q  121 accctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcat 173  Q
    |||||||||||||||  |||||||||||||||||| |||||||| ||||||||    
T  53352008 accctaaacctagatagtttaggcgccaatcaaggtggtccgttggatctcat 53351956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 70 - 214
Target Start/End: Original strand, 1262084 - 1262229
Alignment:
Q  70 tgaaattatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagat 168  Q
    |||||| |||||||||||||||| |  |||||||||||||||||||||||||||||||||||| ||  ||| ||| || || |||||    ||||| |||    
T  1262084 tgaaatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaagccgttggat 1262183  T
Q  169 ctcatcatttggctaggcattcatctcatcctttgatttaatctga 214  Q
    ||||||||||||||| |||| |||||||||||||||| ||||||||    
T  1262184 ctcatcatttggctaagcatgcatctcatcctttgatctaatctga 1262229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 43071500 - 43071362
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaat-caaggaggtccgttagatctcatca 175  Q
    |||||||||||||||| |  ||||||||||||||||  |||||||||||||||||| ||  ||| ||| ||||  |||||  | ||||| ||||||||||    
T  43071500 atacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatca 43071401  T
Q  176 tttggctaggcattcatctcatcctttgatttaatctga 214  Q
    |||||||| |||| |||||||||||||||| ||||||||    
T  43071400 tttggctaagcatgcatctcatcctttgatctaatctga 43071362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 26910099 - 26909961
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctcatca 175  Q
    |||||||||||||||| |  |||||||||||||| ||||||||||||||||||||| ||   || ||| || || |||||  | || || ||||| ||||    
T  26910099 atacttatatctaatctttgttaacattgctaataactttgcaaaccctaaacctaaatggatttggctccaaaacaagggagaccattggatcttatca 26910000  T
Q  176 tttggctaggcattcatctcatcctttgatttaatctga 214  Q
    |||||||| |||| |||||||||||||||| ||||||||    
T  26909999 tttggctaagcatgcatctcatcctttgatctaatctga 26909961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 48849925 - 48849787
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaat-caaggaggtccgttagatctcatca 175  Q
    |||||||||||||||| |  ||||||||||||||||||||| ||| |||||||||| ||  ||| ||| ||||  |||||   |  ||| ||||||||||    
T  48849925 atacttatatctaatctttgttaacattgctaatgactttgtaaatcctaaacctaaatggttttggctccaaaacaagggattttgttggatctcatca 48849826  T
Q  176 tttggctaggcattcatctcatcctttgatttaatctga 214  Q
    |||||||| |||| |||||||||||||||| ||||||||    
T  48849825 tttggctaagcatgcatctcatcctttgatctaatctga 48849787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 214
Target Start/End: Original strand, 35055 - 35204
Alignment:
Q  66 attatgaaattatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaa-ggaggtccgt 163  Q
    |||||| ||| |||||||||||||||| |  |||||||||||||||||||||||||||||||||||| ||  ||| ||| || || ||| ||||||  ||    
T  35055 attatgcaatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggt-tgt 35153  T
Q  164 tagatctcatcatttggctaggcattcatctcatcctttgatttaatctga 214  Q
    | |||||||||||||||||| |||| |||||||||||||||| ||||||||    
T  35154 tggatctcatcatttggctaagcatgcatctcatcctttgatctaatctga 35204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 11752 - 11614
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctcatca 175  Q
    |||||||||||||||| |  ||||||||||||||||||||||||||||||||||||  |  ||| | | || || |||||  | ||||| ||||||||||    
T  11752 atacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaactggttttgactccaaaacaagggaggccgttggatctcatca 11653  T
Q  176 tttggctaggcattcatctcatcctttgatttaatctga 214  Q
    ||||| || |||| |||||||||||||||||||||||||    
T  11652 tttggttaagcatgcatctcatcctttgatttaatctga 11614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 81 - 214
Target Start/End: Complemental strand, 33045545 - 33045411
Alignment:
Q  81 ttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc--aatcaaggaggtccgttagatctcatcattt 178  Q
    |||||||||||| |  |||||||||||||||||||||||||||||||||||| ||  ||| ||| ||  ||| | ||||| ||||| |||||||||||||    
T  33045545 ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggagg-ccgttggatctcatcattt 33045447  T
Q  179 ggctaggcattcatctcatcctttgatttaatctga 214  Q
    || || |||| |||||||||||||||| ||||||||    
T  33045446 ggttaagcatgcatctcatcctttgatctaatctga 33045411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 77 - 183
Target Start/End: Original strand, 3065701 - 3065807
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcatcat 176  Q
    |||||||||||||||| |  ||||||| |||||||||||||||||||||||||||| ||  ||| ||| |||| |||||  | ||||| |||||||||||    
T  3065701 atacttatatctaatctttgttaacatggctaatgactttgcaaaccctaaacctaaatggttttggctccaaacaagggagaccgttggatctcatcat 3065800  T
Q  177 ttggcta 183  Q
    |||||||    
T  3065801 ttggcta 3065807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 77 - 202
Target Start/End: Original strand, 10092515 - 10092641
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctcatca 175  Q
    |||||||||||||||| |  ||||||||| |||||||||||||||||||||| ||| ||  ||| ||| || || |||||  | ||||| ||||||||||    
T  10092515 atacttatatctaatctttgttaacattgttaatgactttgcaaaccctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca 10092614  T
Q  176 tttggctaggcattcatctcatccttt 202  Q
    |||||||| |||| |||||||| ||||    
T  10092615 tttggctaagcatgcatctcattcttt 10092641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 240
Target Start/End: Original strand, 8976411 - 8976571
Alignment:
Q  81 ttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatc-aaggaggtccgttagatctcatcatttg 179  Q
    |||||||||||| |  |||| ||||||||||||||| ||||| ||||||||| ||  ||| ||| ||||   ||||  | ||||| |||||||| ||||     
T  8976411 ttatatctaatctttgttaatattgctaatgactttacaaactctaaacctaaatggttttggctccaaaataagggagaccgttggatctcattattta 8976510  T
Q  180 gctaggcattcatctcatcctttgatttaatctgacttctaactttcatttccccatgcca 240  Q
    ||||  ||| |||||||||||||||| ||||||||   |  ||||||||||||||||||||    
T  8976511 gctaaacatgcatctcatcctttgatctaatctgatcgcagactttcatttccccatgcca 8976571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 16246700 - 16246760
Alignment:
Q  72 aaattatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaaccta 132  Q
    |||| |||||||||||||||| |  | ||||||||||||||||||||||||||||| ||||    
T  16246700 aaatcatacttatatctaatctttgtgaacattgctaatgactttgcaaaccctaatccta 16246760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 4660293 - 4660238
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaaccta 132  Q
    |||||||||| ||||| |  ||||||||||||||||||||||||||||||| ||||    
T  4660293 atacttatatataatctttgttaacattgctaatgactttgcaaaccctaacccta 4660238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 30908483 - 30908436
Alignment:
Q  81 ttatatctaatcctaattaacattgctaatgactttgcaaaccctaaa 128  Q
    |||||||||||| |  ||||||||||||||||||||||||||||||||    
T  30908483 ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaa 30908436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 27444274 - 27444346
Alignment:
Q  239 cacaattcaaattaaagtttaccgtgcattgtaaa-tgacaaacaattaatgttaactgtttccaatacagtg 310  Q
    ||||||||||||| |||||||| |||||||||||| ||||||| | ||||||||| | ||||  |||||||||    
T  27444274 cacaattcaaattcaagtttacggtgcattgtaaattgacaaatagttaatgttatcggttttgaatacagtg 27444346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 29863479 - 29863341
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctcatca 175  Q
    |||||||||||||||| |  ||||||||||| ||||||||||||||| |||||||| ||  ||| ||| || || |||||  | ||||| ||||||||||    
T  29863479 atacttatatctaatctttgttaacattgctcatgactttgcaaaccgtaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatca 29863380  T
Q  176 tttggctaggcattcatctcatcctttgatttaatctga 214  Q
    |||||||  |||| |||||||||||||||| ||||||||    
T  29863379 tttggctgagcatgcatctcatcctttgatctaatctga 29863341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 12506439 - 12506511
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaa 149  Q
    |||||||||||||||| |  ||||||||||||||||||||||||| |||||||||| ||  ||| ||||||||    
T  12506439 atacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaataatttgggcgccaa 12506511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 106
Target Start/End: Original strand, 10195654 - 10195685
Alignment:
Q  75 ttatacttatatctaatcctaattaacattgc 106  Q
    ||||||||||||||||||||||||||||||||    
T  10195654 ttatacttatatctaatcctaattaacattgc 10195685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 132
Target Start/End: Original strand, 24260243 - 24260278
Alignment:
Q  97 ttaacattgctaatgactttgcaaaccctaaaccta 132  Q
    ||||||||||||||||||||||||||||||| ||||    
T  24260243 ttaacattgctaatgactttgcaaaccctaacccta 24260278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 38014371 - 38014415
Alignment:
Q  104 tgctaatgactttgcaaaccctaaacctagattttttaggcgccaa 149  Q
    ||||||||||||| |||| |||||||||||| ||||||||||||||    
T  38014371 tgctaatgactttacaaaacctaaacctaga-tttttaggcgccaa 38014415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 36903 - 36832
Alignment:
Q  239 cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaatacagtg 310  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| | |||||||||||||||    
T  36903 cacaattcaaattcaagtttacagtgcattgtaaatgacaaataattaatgttatcggtttccaatacagtg 36832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 43087 - 43015
Alignment:
Q  239 cacaattcaaattaaagtttaccgtgcattgtaaa-tgacaaacaattaatgttaactgtttccaatacagtg 310  Q
    ||||||||||||| |||||||| |||||||||||| ||||||| | ||||||||| | ||||  |||||||||    
T  43087 cacaattcaaattcaagtttacggtgcattgtaaattgacaaatagttaatgttatcggttttgaatacagtg 43015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 77 - 214
Target Start/End: Original strand, 657 - 795
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaa--tcaaggaggtccgttagatctcatc 174  Q
    |||||||||||| ||| |  ||||||||||||||||  |||||||||||||||||| ||  ||| | | ||||  | | ||||| ||||| |||||||||    
T  657 atacttatatctgatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttgactccaaaataagggagg-ccgttggatctcatc 755  T
Q  175 atttggctaggcattcatctcatcctttgatttaatctga 214  Q
    ||||||||| |||| |||||||||||||||| ||||||||    
T  756 atttggctaagcatgcatctcatcctttgatctaatctga 795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 14038 - 13966
Alignment:
Q  77 atacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaa 149  Q
    |||||||||||||||| |  ||||||||||||||||||||||||| |||||||||| ||  ||| ||||||||    
T  14038 atacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaataatttgggcgccaa 13966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 72 - 238
Target Start/End: Original strand, 25223217 - 25223385
Alignment:
Q  72 aaattatacttatatctaatcctaattaacattgctaatgactttgc-aaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatct 170  Q
    |||| |||||||||||||||| |  |||||| ||||||| || |||| |||||||||| ||||   |||| ||||||||| ||||||  ||||| ||||     
T  25223217 aaatcatacttatatctaatctttgttaacaatgctaattaccttgcaaaaccctaaagctagccattttgggcgccaattaaggagagccgtttgatca 25223316  T
Q  171 catcatttggctaggcattcatctcatcctttgatttaatctgacttctaactttca-tttccccatgc 238  Q
     || |  | |||| ||||||||||||||||||||| | || ||||||   ||||||| |||||||||||    
T  25223317 aatgagctagctaagcattcatctcatcctttgatctcatttgacttggcactttcagtttccccatgc 25223385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 7608179 - 7608113
Alignment:
Q  239 cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaata 305  Q
    |||||||||| || |||||||| ||| ||||||||||||||| |||||||||||   ||||||||||    
T  7608179 cacaattcaagttcaagtttacagtgtattgtaaatgacaaataattaatgttattggtttccaata 7608113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 50990911 - 50990965
Alignment:
Q  78 tacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaaccta 132  Q
    ||||||||||||||| |  ||||||||||| || |||||||||||||||||||||    
T  50990911 tacttatatctaatctttgttaacattgctgataactttgcaaaccctaaaccta 50990965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 31771167 - 31771101
Alignment:
Q  239 cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaata 305  Q
    |||||||||| || || ||||| ||| ||||||||||||||| |||||||||||   ||||||||||    
T  31771167 cacaattcaagttcaaatttacagtgtattgtaaatgacaaataattaatgttattggtttccaata 31771101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 132
Target Start/End: Complemental strand, 7571 - 7536
Alignment:
Q  97 ttaacattgctaatgactttgcaaaccctaaaccta 132  Q
    ||||||||||||||||||||||||||||||| ||||    
T  7571 ttaacattgctaatgactttgcaaaccctaacccta 7536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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