View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19459_high_10 (Length: 416)
Name: NF19459_high_10
Description: NF19459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19459_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 38054998 - 38055389
Alignment:
| Q |
18 |
gttacctaagcaacccatgattcctctcccaaccgagtctactctaagatggccaatatgaggtactaactctttcttagtccatatggtgagaaaaatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38054998 |
gttacctaagcaacccatgattcctctcccaacagagtctactctaagatggccaatatgaggtactaactctttcttagtccatatggtgagaaaaatt |
38055097 |
T |
|
| Q |
118 |
ccaaccatttgtttacttgatacgagagagtatttagattgaccaggagaagctggtatttctgcaattgaaagcaattcttccatgctactttcaccgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38055098 |
ccaaccatttgtttacttgatacgagagagtatttagattgaccaggagaagctggtatttctgcaattgaaagcaattcttccatgctactttcaccgt |
38055197 |
T |
|
| Q |
218 |
gaatctcagaatctaacttattcataggatcactaaattttctaaccctacgtcgctctctagatggagattccacagggcaattgcaagccttaaggag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38055198 |
gaatctcagaatctaacttattcataggatcactaaattttctaaccctacgtcgctctctagatggagattccacagggcaattgcaagccttaaggag |
38055297 |
T |
|
| Q |
318 |
gctgctaccttctgccctgaaacttctacggacagctttaagagatggcttctgaaagaaatgtagacttgctggtgactttgattcctttg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38055298 |
gctgctaccttctgccctgaaacttctacggacagctttaagagatggcttctgaaagaaatgtagacttgctggtgactttgattcctttg |
38055389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University