View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19459_high_2 (Length: 611)

Name: NF19459_high_2
Description: NF19459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19459_high_2
NF19459_high_2
[»] chr5 (8 HSPs)
chr5 (9-592)||(33687854-33688438)
chr5 (137-290)||(33689865-33690018)
chr5 (184-280)||(6742441-6742537)
chr5 (383-447)||(33673481-33673545)
chr5 (25-110)||(25076073-25076158)
chr5 (25-110)||(25134042-25134127)
chr5 (152-192)||(3161631-3161671)
chr5 (58-112)||(21637124-21637178)
[»] chr6 (8 HSPs)
chr6 (162-293)||(30488432-30488563)
chr6 (24-110)||(24544807-24544893)
chr6 (24-112)||(15866767-15866855)
chr6 (24-112)||(33866286-33866374)
chr6 (25-87)||(14619134-14619196)
chr6 (225-293)||(25050859-25050927)
chr6 (23-76)||(5377100-5377153)
chr6 (56-100)||(32080134-32080178)
[»] chr7 (6 HSPs)
chr7 (58-293)||(29597963-29598208)
chr7 (28-88)||(21632921-21632981)
chr7 (23-61)||(28126370-28126408)
chr7 (53-110)||(6687172-6687229)
chr7 (184-293)||(21633315-21633424)
chr7 (150-202)||(3232987-3233039)
[»] chr4 (8 HSPs)
chr4 (157-286)||(42664936-42665065)
chr4 (24-112)||(18395600-18395688)
chr4 (225-293)||(42665179-42665247)
chr4 (167-286)||(10032664-10032782)
chr4 (225-293)||(18812706-18812774)
chr4 (24-86)||(18320112-18320174)
chr4 (24-86)||(18398509-18398571)
chr4 (23-61)||(52518997-52519035)
[»] chr3 (3 HSPs)
chr3 (184-281)||(26667114-26667211)
chr3 (161-293)||(25836367-25836499)
chr3 (24-76)||(6789842-6789894)
[»] chr1 (6 HSPs)
chr1 (24-100)||(3283000-3283076)
chr1 (24-112)||(9310599-9310687)
chr1 (167-286)||(1284834-1284952)
chr1 (160-280)||(10653500-10653616)
chr1 (23-94)||(17449514-17449585)
chr1 (66-112)||(33072926-33072972)
[»] chr2 (4 HSPs)
chr2 (225-293)||(14007624-14007692)
chr2 (236-293)||(20957437-20957494)
chr2 (58-114)||(20957798-20957854)
chr2 (236-286)||(20957616-20957666)
[»] scaffold0245 (2 HSPs)
scaffold0245 (167-286)||(9479-9597)
scaffold0245 (167-286)||(11101-11219)
[»] scaffold0229 (1 HSPs)
scaffold0229 (167-286)||(9807-9925)
[»] chr8 (4 HSPs)
chr8 (225-291)||(35674992-35675058)
chr8 (65-110)||(19473719-19473764)
chr8 (65-110)||(19544644-19544689)
chr8 (65-110)||(19588007-19588052)
[»] scaffold0057 (1 HSPs)
scaffold0057 (65-110)||(58973-59018)
[»] scaffold0060 (1 HSPs)
scaffold0060 (225-293)||(9125-9193)


Alignment Details
Target: chr5 (Bit Score: 527; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 9 - 592
Target Start/End: Complemental strand, 33688438 - 33687854
Alignment:
Q  9 acatcatcatatttttcatcttcatccctagggtatcgctctaataccatgttatgaatcatgaaatcccaaggataaaggtcataatgatccgcaagaa 108  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  33688438 acatcatcatatttttcatcttcatccctagg-tatcgctctaataccatgttatgaatcatgaaatcccaagggtaaaggtcatagtgatccgcaagaa 33688340  T
Q  109 agagtgagtat--atgttggagatactcaaagactcataacaaaatgaattagatttgataaaagataacaagagaatacaatggtgagagctattaata 206  Q
    |||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33688339 agagtgagtattcatgttggagatactcaaagactcataacagaatgaattagatttgataaaagataacaagagaatacaatggtgagagctattaata 33688240  T
Q  207 gaggtggattagtcgtagtaactcttaaatacctaaccaactaaccaaccataatttacatattaactaactatgatttaatcactaactatactctaat 306  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33688239 gaggtgggttagtcttagtaactcttaaatacctaaccaactaaccaaccataatttacatattaactaactatggtttaatcactaactatactctaat 33688140  T
Q  307 attgagcataagtgaagaaacgtgtttttgtggatagaaatatcatctaacgataaaggttctagaaactgaattaacttcttgtttgacatcaagtttt 406  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33688139 attgagcataagtgaagaaacgtgtttttgttgatagaaatatcatctaacgataaagattctagaaactgaattaacttcttgtttgacatcaagtttt 33688040  T
Q  407 ttccatatacattcatcaagttttctaatttctattaaaatattctactctgactcttatcaagttttttatatgctaacaagagttataagaatgctct 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  33688039 ttccatatacattcatcaagttttctaatttctattaaaatattctactctgactcttatcaagttttttatatgctaacaagagttataagaatgctat 33687940  T
Q  507 agttaagatatatagttaaaattgattttaaagcaatgttgacaatagaatgctatataattttgtaagtatattgatgtagctct 592  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33687939 agttaagatatatagttaaaattgattttaaagcaatgttgacaatcgaatgctatataattttgtaagtatattgatgtagctct 33687854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 137 - 290
Target Start/End: Complemental strand, 33690018 - 33689865
Alignment:
Q  137 agactcataacaaaatgaattagatttgataaaagataacaagagaatacaatggtgagagctattaatagaggtggattagtcgtagtaactcttaaat 236  Q
    |||||||||| | | ||||||||||||||||||||||||||| | | |||||| |||||||||||| |||  ||    ||||||  | | |||||||| |    
T  33690018 agactcataatagagtgaattagatttgataaaagataacaaaatagtacaatagtgagagctatttataagggcaagttagtctaattgactcttaact 33689919  T
Q  237 acctaaccaactaaccaaccataatttacatattaactaactatgatttaatca 290  Q
    ||||||| ||| ||  | ||||| ||||| ||||||||||||||| ||||||||    
T  33689918 acctaactaaccaattatccatagtttacttattaactaactatggtttaatca 33689865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 280
Target Start/End: Complemental strand, 6742537 - 6742441
Alignment:
Q  184 tacaatggtgagagctattaatagaggtggattagtcgtagtaactcttaaatacctaaccaactaaccaaccataatttacatattaactaactat 280  Q
    |||||| ||||||| |||| ||||| ||  ||||||   | |||||||||| |||||||||||| ||| |||||||||||| ||||||| |||||||    
T  6742537 tacaatagtgagagttatttatagaagtaaattagtttaactaactcttaattacctaaccaaccaactaaccataatttatatattaattaactat 6742441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 447
Target Start/End: Complemental strand, 33673545 - 33673481
Alignment:
Q  383 acttcttgtttgacatcaagttttttccatatacattcatcaagttttctaatttctattaaaat 447  Q
    ||||||||||||||||||||||||| | ||||  |||| ||||||||||||| || |||||||||    
T  33673545 acttcttgtttgacatcaagtttttactatatgtattcctcaagttttctaagttttattaaaat 33673481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 25076073 - 25076158
Alignment:
Q  25 catcttcatccctagggtatcgctctaataccatgttatgaatcatgaaatcccaaggataaaggtcataatgatccgcaagaaag 110  Q
    ||||||| ||| |||| |||| ||||||||||||||||||||||||| ||||  | |||  || |||||||||||  |||||||||    
T  25076073 catcttcctccataggttatctctctaataccatgttatgaatcatggaatcatagggaagaatgtcataatgattagcaagaaag 25076158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 25134042 - 25134127
Alignment:
Q  25 catcttcatccctagggtatcgctctaataccatgttatgaatcatgaaatcccaaggataaaggtcataatgatccgcaagaaag 110  Q
    ||||||| ||| |||| |||| ||||||||||||||||||||||||| ||||  | |||  || |||||||||||  |||||||||    
T  25134042 catcttcctccataggttatctctctaataccatgttatgaatcatggaatcatagggaagaatgtcataatgattagcaagaaag 25134127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 3161671 - 3161631
Alignment:
Q  152 tgaattagatttgataaaagataacaagagaatacaatggt 192  Q
    ||||||||||||||||||||||||||||| | |||||||||    
T  3161671 tgaattagatttgataaaagataacaagaaagtacaatggt 3161631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 21637124 - 21637178
Alignment:
Q  58 tgttatgaatcatgaaatcccaaggataaaggtcataatgatccgcaagaaagag 112  Q
    |||||| ||||||| ||||||| |||||||| ||||||||||| | |||||||||    
T  21637124 tgttataaatcatggaatcccatggataaagatcataatgatcagtaagaaagag 21637178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 5e-30; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 162 - 293
Target Start/End: Complemental strand, 30488563 - 30488432
Alignment:
Q  162 ttgataaaagataacaagagaatacaatggtgagagctattaatagaggtggattagtcgtagtaactcttaaatacctaaccaactaaccaaccataat 261  Q
    ||||||||||||||| ||||| ||||||||||||||||||| |||| ||||  ||||||  | ||||| |||| || ||||||||| ||| |||||||||    
T  30488563 ttgataaaagataactagagattacaatggtgagagctatttataggggtgagttagtctaactaacttttaactatctaaccaaccaacaaaccataat 30488464  T
Q  262 ttacatattaactaactatgatttaatcacta 293  Q
    |||||||||||||||||||| |||| ||||||    
T  30488463 ttacatattaactaactatggtttattcacta 30488432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 24544893 - 24544807
Alignment:
Q  24 tcatcttcatccctagggtatcgctctaataccatgttatgaatcatgaaatcccaaggataaaggtcataatgatccgcaagaaag 110  Q
    ||||||||||||||||||||||||||| |||||||||||  ||||||| |||||||||||||||| ||||| ||||  |||||||||    
T  24544893 tcatcttcatccctagggtatcgctctgataccatgttagtaatcatggaatcccaaggataaagatcatagtgataagcaagaaag 24544807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 15866855 - 15866767
Alignment:
Q  24 tcatcttcatccctagggtatcgctctaataccatgttatgaatcatgaaatcccaaggataaaggtcataatgatccgcaagaaagag 112  Q
    ||||||||||||||||||||||||||| |||||||||||  ||||| | |||||||||||||||| ||||| ||||| || ||||||||    
T  15866855 tcatcttcatccctagggtatcgctctgataccatgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagag 15866767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 33866374 - 33866286
Alignment:
Q  24 tcatcttcatccctagggtatcgctctaataccatgttatgaatcatgaaatcccaaggataaaggtcataatgatccgcaagaaagag 112  Q
    ||||||||||||||||||||||||||| |||||||||||  ||||| | |||||||||||| ||| ||||| ||||| || ||||||||    
T  33866374 tcatcttcatccctagggtatcgctctgataccatgttagtaatcaaggaatcccaaggattaagatcatagtgatcagctagaaagag 33866286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 14619196 - 14619134
Alignment:
Q  25 catcttcatccctagggtatcgctctaataccatgttatgaatcatgaaatcccaaggataaa 87  Q
    |||||||||||||||||||||||||| ||||||||||||| |||| | |||||||||||||||    
T  14619196 catcttcatccctagggtatcgctctgataccatgttatggatcaaggaatcccaaggataaa 14619134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 225 - 293
Target Start/End: Complemental strand, 25050927 - 25050859
Alignment:
Q  225 taactcttaaatacctaaccaactaaccaaccataatttacatattaactaactatgatttaatcacta 293  Q
    |||||||||| ||||||||||| |||| ||||||| ||||||||||| ||||||||| |||| ||||||    
T  25050927 taactcttaactacctaaccaagtaactaaccatagtttacatattatctaactatggtttattcacta 25050859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 5377153 - 5377100
Alignment:
Q  23 ttcatcttcatccctagggtatcgctctaataccatgttatgaatcatgaaatc 76  Q
    ||||||||| |||||||||||||||||| ||||||||||| |||||||| ||||    
T  5377153 ttcatcttcctccctagggtatcgctctgataccatgttaagaatcatggaatc 5377100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 32080178 - 32080134
Alignment:
Q  56 catgttatgaatcatgaaatcccaaggataaaggtcataatgatc 100  Q
    |||||||||||||||| ||||||| |||||||| ||||| |||||    
T  32080178 catgttatgaatcatggaatcccatggataaagatcatagtgatc 32080134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 7e-26; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 58 - 293
Target Start/End: Original strand, 29597963 - 29598208
Alignment:
Q  58 tgttatgaatcatgaaatcccaaggataaaggtcataatgatccgcaagaaagagtg------agtat--atgttggagatactcaaaga--ctcataac 147  Q
    |||||||||||||| ||||||| |||||||||||||| ||||| ||||||||||| |      |||||  |||| |||||||| || |||  ||||||      
T  29597963 tgttatgaatcatggaatcccagggataaaggtcatagtgatcagcaagaaagagagcataagagtattcatgtgggagatacccatagagactcatagt 29598062  T
Q  148 aaaatgaattagatttgataaaagataacaagagaatacaatggtgagagctattaatagaggtggattagtcgtagtaactcttaaatacctaaccaac 247  Q
    | |||||| ||||||||||||||||| |  | ||| || ||||||||||| |||| |||| ||||  ||||||  | |||||| |||  |||||||| ||    
T  29598063 agaatgaactagatttgataaaagatgaataaagagtataatggtgagagttatttataggggtgagttagtctaactaactcctaaccacctaacctac 29598162  T
Q  248 taaccaaccataatttacatattaactaactatgatttaatcacta 293  Q
     ||| ||||||| ||||||||||||||||||||| |||| ||||||    
T  29598163 aaactaaccatagtttacatattaactaactatggtttattcacta 29598208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 21632921 - 21632981
Alignment:
Q  28 cttcatccctagggtatcgctctaataccatgttatgaatcatgaaatcccaaggataaag 88  Q
    |||||||||||||||||| |||| |||||||||||||||||||| ||||||| ||||||||    
T  21632921 cttcatccctagggtatcactctgataccatgttatgaatcatggaatcccatggataaag 21632981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 28126370 - 28126408
Alignment:
Q  23 ttcatcttcatccctagggtatcgctctaataccatgtt 61  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  28126370 ttcatcttcctccctagggtatcgctctgataccatgtt 28126408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 6687172 - 6687229
Alignment:
Q  53 taccatgttatgaatcatgaaatcccaaggataaaggtcataatgatccgcaagaaag 110  Q
    ||||||||||||||||||||||||  |  ||||||| ||||||||||| | |||||||    
T  6687172 taccatgttatgaatcatgaaatcatacagataaagatcataatgatcagaaagaaag 6687229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 293
Target Start/End: Original strand, 21633315 - 21633424
Alignment:
Q  184 tacaatggtgagagctattaatagaggtggattagtcgtagtaactcttaaatacctaaccaactaaccaaccataatttacatattaactaactatgat 283  Q
    ||||||||||| || |||| |||| |||| ||||||   | |||||| |||  |||||||| || ||| ||||||| ||||||||| ||||||| ||| |    
T  21633315 tacaatggtgatagttatttatagtggtgaattagtataactaactcctaaccacctaacctaccaactaaccatagtttacatatcaactaacaatggt 21633414  T
Q  284 ttaatcacta 293  Q
    ||| ||||||    
T  21633415 ttactcacta 21633424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 3233039 - 3232987
Alignment:
Q  150 aatgaattagatttgataaaagataacaagagaatacaatggtgagagctatt 202  Q
    |||||| ||||||| ||||||||||| |||| ||||||||| |||||| ||||    
T  3233039 aatgaactagatttaataaaagataataagaaaatacaatgatgagagttatt 3232987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 157 - 286
Target Start/End: Complemental strand, 42665065 - 42664936
Alignment:
Q  157 tagatttgataaaagataacaagagaatacaatggtgagagctattaatagaggtggattagtcgtagtaactcttaaatacctaaccaactaaccaacc 256  Q
    |||||||||||||||||||||||| | |||||| |||||| ||||| |||  ||||  ||||||  | |||||||||| ||||||| |||| ||| ||||    
T  42665065 tagatttgataaaagataacaagatagtacaattgtgagaactatttataagggtgagttagtctaactaactcttaactacctaaacaaccaactaacc 42664966  T
Q  257 ataatttacatattaactaactatgattta 286  Q
     || ||||||||||||||||||||| ||||    
T  42664965 gtagtttacatattaactaactatggttta 42664936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 18395600 - 18395688
Alignment:
Q  24 tcatcttcatccctagggtatcgctctaataccatgttatgaatcatgaaatcccaaggataaaggtcataatgatccgcaagaaagag 112  Q
    |||| |||||||||||||||||||||| ||| ||||| |  ||||||||||||||| |||||||||||||| ||||  |||||||||||    
T  18395600 tcatattcatccctagggtatcgctctgatatcatgtaagtaatcatgaaatcccacggataaaggtcatagtgattagcaagaaagag 18395688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 42665179 - 42665247
Alignment:
Q  225 taactcttaaatacctaaccaactaaccaaccataatttacatattaactaactatgatttaatcacta 293  Q
    |||||||||| ||||||| ||| |||| ||||||||||||||||||||||||||||| |||| ||||||    
T  42665179 taactcttaactacctaaacaaataactaaccataatttacatattaactaactatggtttattcacta 42665247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 10032664 - 10032782
Alignment:
Q  167 aaaagataacaagagaatacaatggtgagagctattaatagaggtggattagtcgtagtaactcttaaatacctaaccaactaaccaaccataatttaca 266  Q
    |||||||||| ||||| |||||| ||||||| |||| |||| ||||  ||||||  |   |||||||| |||||||||||| ||| ||||||| ||||||    
T  10032664 aaaagataactagagagtacaatagtgagagttatttatag-ggtgagttagtctaaccgactcttaactacctaaccaaccaactaaccatagtttaca 10032762  T
Q  267 tattaactaactatgattta 286  Q
    | | ||||||||||| ||||    
T  10032763 tctcaactaactatggttta 10032782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 18812706 - 18812774
Alignment:
Q  225 taactcttaaatacctaaccaactaaccaaccataatttacatattaactaactatgatttaatcacta 293  Q
    |||||||||| |||||||| || |||| ||||||| ||||||||||| |||| |||| |||| ||||||    
T  18812706 taactcttaactacctaactaagtaactaaccatagtttacatattatctaattatggtttattcacta 18812774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 18320174 - 18320112
Alignment:
Q  24 tcatcttcatccctagggtatcgctctaataccatgttatgaatcatgaaatcccaaggataa 86  Q
    |||||||||||||||||||||| || | ||||||| |||  ||||||| ||||| ||||||||    
T  18320174 tcatcttcatccctagggtatctctatgataccatattagtaatcatggaatccaaaggataa 18320112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 18398509 - 18398571
Alignment:
Q  24 tcatcttcatccctagggtatcgctctaataccatgttatgaatcatgaaatcccaaggataa 86  Q
    |||||||||||||||||||||| || | ||||||| |||  ||||||| ||||| ||||||||    
T  18398509 tcatcttcatccctagggtatctctatgataccatattagtaatcatggaatccaaaggataa 18398571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 52519035 - 52518997
Alignment:
Q  23 ttcatcttcatccctagggtatcgctctaataccatgtt 61  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  52519035 ttcatcttcctccctagggtatcgctctgataccatgtt 52518997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 184 - 281
Target Start/End: Original strand, 26667114 - 26667211
Alignment:
Q  184 tacaatggtgagagctattaatagaggtggattagtcgtagtaactcttaaatacctaaccaactaaccaaccataatttacatattaactaactatg 281  Q
    |||||||||||||| |||| |||| ||||  ||||||  | |||||||||| |||||||| ||| ||| |||||||||||||||||||||||||||||    
T  26667114 tacaatggtgagagttatttataggggtgagttagtctaactaactcttaactacctaactaaccaactaaccataatttacatattaactaactatg 26667211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 161 - 293
Target Start/End: Complemental strand, 25836499 - 25836367
Alignment:
Q  161 tttgataaaagataacaagagaatacaatggtgagagctattaatagaggtggattagtcgtagtaactcttaaatacctaaccaactaaccaaccataa 260  Q
    |||||||||||||||||||||| |||||||||||||| |||| |||  | || | |||||  | |||||| ||| |||||||| ||| ||| | |||||     
T  25836499 tttgataaaagataacaagagagtacaatggtgagagttatttataaggatgaactagtctaactaactcctaactacctaactaaccaactagccatag 25836400  T
Q  261 tttacatattaactaactatgatttaatcacta 293  Q
    ||||  ||| ||||||||||| |||| ||||||    
T  25836399 tttatctatcaactaactatggtttattcacta 25836367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 6789894 - 6789842
Alignment:
Q  24 tcatcttcatccctagggtatcgctctaataccatgttatgaatcatgaaatc 76  Q
    |||||||| |||||||||||||||||| ||||||||||| |||||||| ||||    
T  6789894 tcatcttcctccctagggtatcgctctgataccatgttaagaatcatggaatc 6789842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 3283076 - 3283000
Alignment:
Q  24 tcatcttcatccctagggtatcgctctaataccatgttatgaatcatgaaatcccaaggataaaggtcataatgatc 100  Q
    ||||||||||||||||||||||||||| |||||||||||  ||||| | |||||||||||||||| ||||| |||||    
T  3283076 tcatcttcatccctagggtatcgctctgataccatgttagtaatcaaggaatcccaaggataaagatcatagtgatc 3283000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 9310687 - 9310599
Alignment:
Q  24 tcatcttcatccctagggtatcgctctaataccatgttatgaatcatgaaatcccaaggataaaggtcataatgatccgcaagaaagag 112  Q
    ||||| ||||||||||||||||||||| |||||||||||  ||||| | |||| ||||||||||| ||||| ||||| || ||||||||    
T  9310687 tcatcatcatccctagggtatcgctctgataccatgttagtaatcaaggaatctcaaggataaagatcatagtgatcagctagaaagag 9310599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 286
Target Start/End: Complemental strand, 1284952 - 1284834
Alignment:
Q  167 aaaagataacaagagaatacaatggtgagagctattaatagaggtggattagtcgtagtaactcttaaatacctaaccaactaaccaaccataatttaca 266  Q
    |||||||||| ||||| |||||| |||| || |||| |||| ||||  ||||||  | |||||||||| |||||||||||| ||| ||||||| ||||||    
T  1284952 aaaagataactagagagtacaatagtgatagttatttatag-ggtgagttagtctaactaactcttaactacctaaccaaccaactaaccatagtttaca 1284854  T
Q  267 tattaactaactatgattta 286  Q
    | | ||||||||||| ||||    
T  1284853 tctcaactaactatggttta 1284834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 280
Target Start/End: Complemental strand, 10653616 - 10653500
Alignment:
Q  160 atttgataaaagataacaagagaatacaatggtgagagctattaatagaggtggattagtcgtagtaactcttaaatacctaaccaactaaccaaccata 259  Q
    ||||||||||||| |||||| || |||||| |||||||||||| | || ||||  ||||||  | ||||||||||  |||||||||||||    ||||||    
T  10653616 atttgataaaagacaacaagggagtacaattgtgagagctatttacaggggtgagttagtctaactaactcttaaccacctaaccaacta----accata 10653521  T
Q  260 atttacatattaactaactat 280  Q
    |||||| ||| ||||||||||    
T  10653520 atttacgtataaactaactat 10653500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 17449585 - 17449514
Alignment:
Q  23 ttcatcttcatccctagggtatcgctctaataccatgttatgaatcatgaaatcccaaggataaaggtcata 94  Q
    ||||||||| | |||||||||||||||| ||||||||||| |||||||| ||||  | ||| ||||||||||    
T  17449585 ttcatcttccttcctagggtatcgctctgataccatgttaagaatcatggaatcatagggagaaaggtcata 17449514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 33072972 - 33072926
Alignment:
Q  66 atcatgaaatcccaaggataaaggtcataatgatccgcaagaaagag 112  Q
    |||||| |||| || |||||||||||||||||||| |||||||||||    
T  33072972 atcatggaatctcagggataaaggtcataatgatcagcaagaaagag 33072926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 225 - 293
Target Start/End: Complemental strand, 14007692 - 14007624
Alignment:
Q  225 taactcttaaatacctaaccaactaaccaaccataatttacatattaactaactatgatttaatcacta 293  Q
    |||||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||| |||| ||||||    
T  14007692 taactcttaactacctaaccaaccaactaaccatagtttacatattaactaactatggtttattcacta 14007624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 20957494 - 20957437
Alignment:
Q  236 tacctaaccaactaaccaaccataatttacatattaactaactatgatttaatcacta 293  Q
    |||||||| ||||||| ||||||||||||||||| | ||||||||| |||| ||||||    
T  20957494 tacctaactaactaactaaccataatttacatataacctaactatggtttattcacta 20957437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 20957854 - 20957798
Alignment:
Q  58 tgttatgaatcatgaaatcccaaggataaaggtcataatgatccgcaagaaagagtg 114  Q
    |||||||||||||| ||||||| |||||||||||| | ||||| ||||| |||||||    
T  20957854 tgttatgaatcatggaatcccagggataaaggtcacagtgatcagcaaggaagagtg 20957798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 20957666 - 20957616
Alignment:
Q  236 tacctaaccaactaaccaaccataatttacatattaactaactatgattta 286  Q
    |||||||| ||||||| ||||||||||||||||| | ||||||||| ||||    
T  20957666 tacctaactaactaactaaccataatttacatataacctaactatggttta 20957616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 167 - 286
Target Start/End: Complemental strand, 9597 - 9479
Alignment:
Q  167 aaaagataacaagagaatacaatggtgagagctattaatagaggtggattagtcgtagtaactcttaaatacctaaccaactaaccaaccataatttaca 266  Q
    |||||||||| ||||| |||||| |||| || |||| |||| ||||  ||||||  | |||| ||||| |||||||||||| ||| ||||||| ||||||    
T  9597 aaaagataactagagagtacaatagtgatagttatttatag-ggtgagttagtctaactaacacttaactacctaaccaaccaactaaccatagtttaca 9499  T
Q  267 tattaactaactatgattta 286  Q
    | | ||||||||||| ||||    
T  9498 tctcaactaactatggttta 9479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 167 - 286
Target Start/End: Complemental strand, 11219 - 11101
Alignment:
Q  167 aaaagataacaagagaatacaatggtgagagctattaatagaggtggattagtcgtagtaactcttaaatacctaaccaactaaccaaccataatttaca 266  Q
    |||||||||| ||||| |||||| |||| || |||| |||| ||||  ||||||  | |||||||||| |||||||||||| ||| ||||||| |||| |    
T  11219 aaaagataactagagagtacaatagtgatagttatttatag-ggtgagttagtctaactaactcttaactacctaaccaaccaactaaccatagtttata 11121  T
Q  267 tattaactaactatgattta 286  Q
    | | ||||||||||| ||||    
T  11120 tctcaactaactatggttta 11101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 167 - 286
Target Start/End: Complemental strand, 9925 - 9807
Alignment:
Q  167 aaaagataacaagagaatacaatggtgagagctattaatagaggtggattagtcgtagtaactcttaaatacctaaccaactaaccaaccataatttaca 266  Q
    |||||||||| ||||| |||||| |||| || |||| |||| ||||  ||||||  | |||| ||||| |||||||||||| ||| ||||||| ||||||    
T  9925 aaaagataactagagagtacaatagtgatagttatttatag-ggtgagttagtctaactaacacttaactacctaaccaaccaactaaccatagtttaca 9827  T
Q  267 tattaactaactatgattta 286  Q
    | | ||||||||||| ||||    
T  9826 tctcaactaactatggttta 9807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 291
Target Start/End: Original strand, 35674992 - 35675058
Alignment:
Q  225 taactcttaaatacctaaccaactaaccaaccataatttacatattaactaactatgatttaatcac 291  Q
    |||||| ||| || ||||| ||| ||| ||||||| |||||||||||||||||||||||||| ||||    
T  35674992 taactcctaactatctaactaaccaactaaccatagtttacatattaactaactatgatttattcac 35675058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 19473764 - 19473719
Alignment:
Q  65 aatcatgaaatcccaaggataaaggtcataatgatccgcaagaaag 110  Q
    ||||||| |||||||||||||||| ||||| ||||| |||||||||    
T  19473764 aatcatggaatcccaaggataaagatcatagtgatcagcaagaaag 19473719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 19544689 - 19544644
Alignment:
Q  65 aatcatgaaatcccaaggataaaggtcataatgatccgcaagaaag 110  Q
    ||||||| |||||||||||||||| ||||| ||||| |||||||||    
T  19544689 aatcatggaatcccaaggataaagatcatagtgatcagcaagaaag 19544644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 19588007 - 19588052
Alignment:
Q  65 aatcatgaaatcccaaggataaaggtcataatgatccgcaagaaag 110  Q
    ||||||| |||||||||||||||| ||||| ||||| |||||||||    
T  19588007 aatcatggaatcccaaggataaagatcatagtgatcagcaagaaag 19588052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 59018 - 58973
Alignment:
Q  65 aatcatgaaatcccaaggataaaggtcataatgatccgcaagaaag 110  Q
    ||||||| |||||||||||||||| ||||| ||||| |||||||||    
T  59018 aatcatggaatcccaaggataaagatcatagtgatcagcaagaaag 58973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 9125 - 9193
Alignment:
Q  225 taactcttaaatacctaaccaactaaccaaccataatttacatattaactaactatgatttaatcacta 293  Q
    |||||| ||| |||||||||||  ||| ||||||| || |||||| ||||||||||| |||| ||||||    
T  9125 taactcctaactacctaaccaaacaactaaccatagttcacatataaactaactatggtttattcacta 9193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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