View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19459_high_23 (Length: 251)
Name: NF19459_high_23
Description: NF19459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19459_high_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 74 - 191
Target Start/End: Complemental strand, 49495400 - 49495283
Alignment:
| Q |
74 |
aaaacataacgtgaacatggacaggtatgaatacacaaccactttcctcttactgtccaaacaaaaacctgcatgatccatctctccaatcttcttaatt |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49495400 |
aaaacataacgtgaacatggacaggtatgaatacacaaccactttcctcttactgtccaaacaaaaacctgcatgatccatctctccaatcttcttaatc |
49495301 |
T |
|
| Q |
174 |
tccctgattggaatacca |
191 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
49495300 |
tccctgattggaatacca |
49495283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 49495228 - 49495178
Alignment:
| Q |
190 |
catctgtcatcaagacatatttgcaaaatataaactttgtagcaccttcat |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49495228 |
catctgtcatcaagacatatttgcaaaatataaactttgtagcaccttcat |
49495178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University