View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19459_high_3 (Length: 569)
Name: NF19459_high_3
Description: NF19459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19459_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 42413105 - 42413367
Alignment:
| Q |
10 |
agaagcaaaggcactcaactttctcagaaacaagatttccccaacggtgatcaagaccaaaaagagctaaaaattgaaaatttgacatgggttttatgtt |
109 |
Q |
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| T |
42413105 |
agaagcaaaagcactcaactttctcagaaacaagatttccccaacggtgatcaagaccaaaaagagctaaaaattgaaaatttgacatgggttttatgtt |
42413204 |
T |
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| Q |
110 |
gaaatttatcaaagcaatctagaaaaatgagagttgaaaaatgaggtttcaatgaggtatatgttgtttgagatattggagactgagggggtggctgcaa |
209 |
Q |
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| T |
42413205 |
gaaatttatcaaagcaatccagaaaaaagagagttgaaaaatgaggtttcaacaaggtatatgttgtttgagatattggagactgagggggtggctgcaa |
42413304 |
T |
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| Q |
210 |
aatcctctggctcgtggttttcagggttttcctctgctgtaatggctccgattgcgttttcca |
272 |
Q |
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| T |
42413305 |
aatcctctggctcgtggttttcagggttttcctctgctgtaatggctccgattgcgttttcca |
42413367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 357 - 552
Target Start/End: Original strand, 42413508 - 42413703
Alignment:
| Q |
357 |
tctgtagcagagaaatcttgtgataacgagaagggtgaaaaattgttgaagagtgatggcagttatatgtatgtaatttgtctactagtggatcactttt |
456 |
Q |
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| T |
42413508 |
tctgtagcagagaaatcttgtgataacgagaaggatgaacaattgttgaagagtgatggcagttatatgtatgtaatttgtctactagtggatcactttt |
42413607 |
T |
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| Q |
457 |
aaaattgtcaaccttatactattctataagtaatggcagtttacacaaggctacctgttcctacacatgataagctatgttactgacatgggtctt |
552 |
Q |
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| T |
42413608 |
aaagttgtaaaccttatactattctataagtaatggcagtttacacaaggctacctgttcctgcacatgataagctatgttactgacatgggtctt |
42413703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 270 - 359
Target Start/End: Original strand, 42413398 - 42413487
Alignment:
| Q |
270 |
ccatcagtttgtcctactttgaccgtttacttgttcaagcgcctccttcccaattcaaataccagttgctaaacagtaaacagagtatct |
359 |
Q |
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| T |
42413398 |
ccatcagtttgtcctactttgaccgtttacttgttgaagcgcctccttcccaattcaaataccagttgctaaacagtaaacagagtatct |
42413487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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