View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19459_high_4 (Length: 461)
Name: NF19459_high_4
Description: NF19459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19459_high_4 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Original strand, 45393958 - 45394387
Alignment:
| Q |
18 |
aaatggacaccataaattgttcaagctgatcactactcatatcatcaattgaatcattccaccagtcacccttgttgaaaatcttagccaaattttgaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45393958 |
aaatggacaccataaattgttcaagctgatcactactcatatcatcaattgaatcattccaccagtcacccttgttgaaaatcttagccaaattttgaac |
45394057 |
T |
|
| Q |
118 |
atcttctagtttcttcttttccgtctccaacatcttttgtgcctcctcatattgtctattgtaatctttgcaagtcggagaattttctgctgactttgaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45394058 |
atcttctagtttcttcttttccgtctccaacatcttttgtgcctcctcatattgtctattgtaatctttgcaagtcggagaattttctgctgactttgaa |
45394157 |
T |
|
| Q |
218 |
tcctcaaactcagtggttcctttgatgtagctattgaggacaacgttagtgtcgggttgaccaaaacagtagagtttgtcaccaggggaaaacacaatga |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45394158 |
tcctcaaactcagtggttcctttgatgtagctattgaggacaacgttagtgtcgggttgcccaaaacagtagagtttgtcaccaggggaaaacacaatga |
45394257 |
T |
|
| Q |
318 |
tggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtgacaagtttgttggaatctttctc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45394258 |
tggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtgacaagtttgttggaatctttctc |
45394357 |
T |
|
| Q |
418 |
aaccttcttgatctcaatcttctggcgccc |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
45394358 |
aaccttcttgatctcaatcttctggcgccc |
45394387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 53 - 440
Target Start/End: Original strand, 52740601 - 52740991
Alignment:
| Q |
53 |
ctcatatcatcaattgaatcattccaccagtcacc---cttgttgaaaatcttagccaaattttgaacatcttctagtttcttcttttccgtctccaaca |
149 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
52740601 |
ctcatatcatcaattgaatcattccaccaatcaccacccttgttgaaaatcttagccaaattttgaacatcttctagtttcttcttttccatctccaaca |
52740700 |
T |
|
| Q |
150 |
tcttttgtgcctcctcatattgtctattgtaatctttgcaagtcggagaattttctgctgactttgaatcctcaaactcagtggttcctttgatgtagct |
249 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| | | ||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52740701 |
tcttttgtgcctccacatattgtctattgtaatcttggtaggtcagaaaattttctgctacctttgaatcctcaaactcagtggttcctttgatgtagct |
52740800 |
T |
|
| Q |
250 |
attgaggacaacgttagtgtcgggttgaccaaaacagtagagtttgtcaccaggggaaaacacaatgatggctgcatgaacatcacataagacacaaagt |
349 |
Q |
| |
|
||||||||| || ||||||||||| |||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52740801 |
gttgaggacagagtatgtgtcgggttggccaaaacaaaatagtttgtcaccaggagaaaacacaatgatggctgcatgaacatcacataagacacaaagt |
52740900 |
T |
|
| Q |
350 |
tcgcttgcttttctgaataaaccttgtcttctttttgagaaagtgacaagtttgttggaatctttctcaaccttcttgatctcaatcttct |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||| | || ||||||||||||||||||||||||||||||| |
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|
| T |
52740901 |
tcgcttgcttttctgaataaaccttgtcttctttttgagaaagtcacttgtttctgtgattctttctcaaccttcttgatctcaatcttct |
52740991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 27 - 449
Target Start/End: Original strand, 13539205 - 13539603
Alignment:
| Q |
27 |
ccataaattgttcaagctgatcactactcatatcatcaattgaatcattccaccagtcacccttgttgaaaatcttagccaaattttgaacatcttctag |
126 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||| |||||||||||||| || | ||||| ||||||||||||||| |||| |
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|
| T |
13539205 |
ccataaattgttcaagctcttcaatactcatatcatcaatggaatcattccaccaatcgcttttgtt------------caaattttgaacatcggctag |
13539292 |
T |
|
| Q |
127 |
tttcttcttttccgtctccaacatcttttgtgcctcctcatattgtctattgtaatctttgcaagtcggagaattttctgctgactttgaatcctcaaac |
226 |
Q |
| |
|
||||||||| |||| ||||||||| ||| ||||||||||||| |||||||||| |||| || | || | ||| |||||||||||| |
|
|
| T |
13539293 |
tttcttcttctccgactccaacatttttaatgcctcctcatatcgtctattgtactcttc------------atatgatgaagtcttcgaatcctcaaac |
13539380 |
T |
|
| Q |
227 |
tcagtggttcctttgatgtagctattgaggacaacgttagtgtcgggttgaccaaaacagtagagtttgtcaccaggggaaaacacaatgatggctgcat |
326 |
Q |
| |
|
||||||||| | |||||||||||||| || | || ||| |||||||||||| || | |||||||| ||||||||||| | |||||| ||| |
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|
| T |
13539381 |
tcagtggtttcgttgatgtagctattaagaattgtgtcgatgttgggttgaccaaagcaaaatagtttgtcggacggggaaaacaccaccatggctacat |
13539480 |
T |
|
| Q |
327 |
gaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtgacaagtttgttggaatctttctcaaccttctt |
426 |
Q |
| |
|
| | |||||||||||||||||||| ||||||||| |||||| ||||||||||| |||||||| ||||| || |||| || |||| |||| |||||| |
|
|
| T |
13539481 |
gtgcgtcacataagacacaaagttcacttgcttttttgaatagaccttgtcttcgctttgagaatgtgacttgtctgttcgatgctttgtcaatcttctt |
13539580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 52740539 - 52740601
Alignment:
| Q |
18 |
aaatggacaccataaattgttcaagctgatcactactcatatcatcaattgaatcattccacc |
80 |
Q |
| |
|
||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52740539 |
aaatggatatcataaattgttcaagttgatcactactcatatcatcaattgaatcattccacc |
52740601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 153; Significance: 6e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 35782392 - 35781972
Alignment:
| Q |
18 |
aaatggacaccataaattgttcaagctgatcactactcatatcatcaattgaatcattccaccagtcacccttgttgaaaatcttagccaaattttgaac |
117 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||| |||| |||||||| || ||||||||||||| |||| | || ||||||||| |||||||| ||| |
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|
| T |
35782392 |
aaatggactccataaattcttcaagctgatcactattcatctcatcaatagattcattccaccagttacccatattccaaatcttagtcaaattttcaac |
35782293 |
T |
|
| Q |
118 |
atcttctagtttcttcttttccgtctccaacatcttttgtgcctcctcatattgtctattgtaatctttgcaagtcggagaattttctgctgactttgaa |
217 |
Q |
| |
|
||| | ||||||| |||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||| | |||| ||||||| | | ||| |||||| |
|
|
| T |
35782292 |
atcagcaagtttctgtttttccatttccaacacctttagtgcctcctcatattgtttattgtactctttgtaggtcgaagaatttcccgttgagtttgaa |
35782193 |
T |
|
| Q |
218 |
tcctcaaactcagtggttcctttgatgtagctattgaggacaacgttagtgtcgggttgaccaaaacagtagagtttgtcaccaggggaaaacacaatga |
317 |
Q |
| |
|
| ||||||||| ||||||| |||||||||||||| |||| || |||| |||| ||| ||||||| |||||| || |||| |||||||| |||| |
|
|
| T |
35782192 |
acatcaaactcaatggttccattgatgtagctattaaggatttggtcggtgtttggttcaccgaaacagtgtagtttgccagcaggagaaaacacgatga |
35782093 |
T |
|
| Q |
318 |
tggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtgacaagtttgttggaatctttctc |
417 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || ||||||| ||||||||||||||||||||||||||||||||| | ||||||| ||||| || |
|
|
| T |
35782092 |
tggctgcatgaacatcacataaagtgcaaagttcactcgcttttcggaataaaccttgtcttctttttgagaaagtgacttgcttgttggtttctttttc |
35781993 |
T |
|
| Q |
418 |
aaccttcttgatctcaatctt |
438 |
Q |
| |
|
|| ||| |||||||||||||| |
|
|
| T |
35781992 |
aagctttttgatctcaatctt |
35781972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 27 - 449
Target Start/End: Original strand, 9668181 - 9668579
Alignment:
| Q |
27 |
ccataaattgttcaagctgatcactactcatatcatcaattgaatcattccaccagtcacccttgttgaaaatcttagccaaattttgaacatcttctag |
126 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||| |||||||||||||| || | ||||| ||||||||||||||| |||| |
|
|
| T |
9668181 |
ccataaattgttcaagctcttcaatactcatatcatcaatggaatcattccaccaatcgcttttgtt------------caaattttgaacatcggctag |
9668268 |
T |
|
| Q |
127 |
tttcttcttttccgtctccaacatcttttgtgcctcctcatattgtctattgtaatctttgcaagtcggagaattttctgctgactttgaatcctcaaac |
226 |
Q |
| |
|
||||||||| |||| ||||||||| ||| ||||||||||||| |||||||||| |||| || | || | ||| |||||||||||| |
|
|
| T |
9668269 |
tttcttcttctccgactccaacatttttaatgcctcctcatatcgtctattgtactcttc------------atatgatgaagtcttcgaatcctcaaac |
9668356 |
T |
|
| Q |
227 |
tcagtggttcctttgatgtagctattgaggacaacgttagtgtcgggttgaccaaaacagtagagtttgtcaccaggggaaaacacaatgatggctgcat |
326 |
Q |
| |
|
||||||||| | |||||||||||||| || | || ||| |||||||||||| || | |||||||| ||||||||||| | |||||| ||| |
|
|
| T |
9668357 |
tcagtggtttcgttgatgtagctattaagaattgtgtcgatgttgggttgaccaaagcaaaatagtttgtcggacggggaaaacaccaccatggctacat |
9668456 |
T |
|
| Q |
327 |
gaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtgacaagtttgttggaatctttctcaaccttctt |
426 |
Q |
| |
|
| | |||||||||||||||||||| ||||||||| |||||| ||||||||||| |||||||| ||||| || |||| || |||| |||| |||||| |
|
|
| T |
9668457 |
gtgcgtcacataagacacaaagttcacttgcttttttgaatagaccttgtcttcgctttgagaatgtgacttgtctgttcgatgctttgtcaatcttctt |
9668556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 47836431 - 47836263
Alignment:
| Q |
15 |
tcaaaatggacaccataaattgttcaagctgatcactactcatatcatcaattgaatcattccaccagtcacccttgttgaaaatctt---agccaaatt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||| || || |||| ||| |||||| | |
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|
| T |
47836431 |
tcaaaatggacaccataaattgttcaagcacttcactactcatattgtcaattgaatcattccaccaatcacctttcttcaaaaacttggccgccaaaat |
47836332 |
T |
|
| Q |
112 |
ttgaacatcttctagtttcttcttttccgtctccaacatcttttgtgcctcctcatattgtctattgta |
180 |
Q |
| |
|
|| | ||||| |||||||||||| || ||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
47836331 |
ttcagcatctgttagtttcttcttctctaactctaacatctttaatgcctcctcatattgtctattgta |
47836263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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