View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19459_high_6 (Length: 448)
Name: NF19459_high_6
Description: NF19459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19459_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 186 - 444
Target Start/End: Complemental strand, 18906973 - 18906715
Alignment:
| Q |
186 |
acttgcaccatgttgtgttgactttttgaaatatattgatattgtaacaattttttgtatgattgattaatcaaatcatatatgatttatttgttatggt |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18906973 |
acttgcaccatgttgtgttgactttttgaaatatattgatattgtttcagttttttgtatgattgattaatcaaatcatgtatgatttatttgttatggt |
18906874 |
T |
|
| Q |
286 |
ttttgtttgtgttggagataggtagttgaagtttcaacttctaaaactggaaagcatggacatgcaaagtgtcactttgttggtattgatatcttcactg |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
18906873 |
ttttgtttgtgttggagataggtagttgaagtttcaacttctaaaactggaaagcatggacatgcaaagtgtcattttgttggtattgatatcttcactg |
18906774 |
T |
|
| Q |
386 |
gcaaaaaacttgaagatattgttccttcttcccataactgtgatgtatgattttcattt |
444 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
18906773 |
gcaaaaaacttgaagatattgttccttcttctcataactgtgatgtatgattttcattt |
18906715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 18907164 - 18907007
Alignment:
| Q |
7 |
gtgagatgaacaaagaagtaaaacatgtcagacgaggaacaccattttgagtccaaagcagatgctggagcatcaaagacatatccacaacaagctggta |
106 |
Q |
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| T |
18907164 |
gtgagaagaacaaagaagtgaaacatgtcagacgaggaacaccattttgagtccaaagcagatgctggagcatcaaagacatatccacaacaagctggta |
18907065 |
T |
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| Q |
107 |
caatccgcaaaaatggtcacattgttatcaaaaacagaccctgcaaggtttcttttct |
164 |
Q |
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| T |
18907064 |
caatccgcaaaaatggtcacattgttataaaaaacagaccctgcaaggtttcttttct |
18907007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 304 - 432
Target Start/End: Complemental strand, 54580828 - 54580700
Alignment:
| Q |
304 |
taggtagttgaagtttcaacttctaaaactggaaagcatggacatgcaaagtgtcactttgttggtattgatatcttcactggcaaaaaacttgaagata |
403 |
Q |
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| T |
54580828 |
taggttgttgaggtttctacttcaaaaacaggaaagcatggacatgcaaagtgtcactttgttgctattgatatcttcaatgggaaaaaacttgaagata |
54580729 |
T |
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| Q |
404 |
ttgttccttcttcccataactgtgatgta |
432 |
Q |
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| T |
54580728 |
ttgttccttcgtcccacaattgtgatgta |
54580700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 304 - 434
Target Start/End: Complemental strand, 45277852 - 45277722
Alignment:
| Q |
304 |
taggtagttgaagtttcaacttctaaaactggaaagcatggacatgcaaagtgtcactttgttggtattgatatcttcactggcaaaaaacttgaagata |
403 |
Q |
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||||| ||||||||||| || || |||||||||||||| || ||||| || ||||||||||||| |||||| ||||||||| ||| ||||||||||||| |
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| T |
45277852 |
taggttgttgaagtttccacctcgaaaactggaaagcacggtcatgctaaatgtcactttgttgctattgacatcttcacttccaagaaacttgaagata |
45277753 |
T |
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| Q |
404 |
ttgttccttcttcccataactgtgatgtatg |
434 |
Q |
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| T |
45277752 |
tcgttccttcctctcataactgtgatgtatg |
45277722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 155
Target Start/End: Complemental strand, 45278078 - 45277954
Alignment:
| Q |
31 |
atgtcagacgaggaacaccattttgagtccaaagcagatgctggagcatcaaagacatatccacaacaagctggtacaatccgcaaaaatggtcacattg |
130 |
Q |
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||||| ||||| || ||||| || || ||||| || |||||||| || || || || || || ||||||||||| ||||||||||| || || |||| | |
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| T |
45278078 |
atgtctgacgaagagcaccaattcgaatccaaggccgatgctggtgcctccaaaacttaccctcaacaagctggaacaatccgcaagaacggctacatcg |
45277979 |
T |
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| Q |
131 |
ttatcaaaaacagaccctgcaaggt |
155 |
Q |
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| T |
45277978 |
ttatcaaaaaccgtccctgcaaggt |
45277954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 434
Target Start/End: Complemental strand, 46047822 - 46047734
Alignment:
| Q |
346 |
catgcaaagtgtcactttgttggtattgatatcttcactggcaaaaaacttgaagatattgttccttcttcccataactgtgatgtatg |
434 |
Q |
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| T |
46047822 |
catgctaaatgtcattttgttgggattgatatggtcactgctgagaaacttgaagatatcgtgcctttttcccacaactgtgatgtatg |
46047734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 30 - 157
Target Start/End: Original strand, 12821989 - 12822116
Alignment:
| Q |
30 |
catgtcagacgaggaacaccattttgagtccaaagcagatgctggagcatcaaagacatatccacaacaagctggtacaatccgcaaaaatggtcacatt |
129 |
Q |
| |
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|||||| |||||||||||||| |||||||| ||||| ||||| ||||| |||||||| ||||| |||||||| || || ||||||||||||||| |||| |
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| T |
12821989 |
catgtctgacgaggaacaccactttgagtcaaaagccgatgccggagcttcaaagacttatcctcaacaagccggaaccatccgcaaaaatggttacatc |
12822088 |
T |
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| Q |
130 |
gttatcaaaaacagaccctgcaaggttt |
157 |
Q |
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| T |
12822089 |
gttatcaaaaatcgtccctgcaaggttt |
12822116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 30 - 157
Target Start/End: Original strand, 12827631 - 12827758
Alignment:
| Q |
30 |
catgtcagacgaggaacaccattttgagtccaaagcagatgctggagcatcaaagacatatccacaacaagctggtacaatccgcaaaaatggtcacatt |
129 |
Q |
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|||||| |||||||||||||| |||||||| ||||| ||||| ||||| |||||||| ||||| |||||||| || || ||||||||||||||| |||| |
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| T |
12827631 |
catgtctgacgaggaacaccactttgagtcaaaagccgatgccggagcttcaaagacttatcctcaacaagccggaaccatccgcaaaaatggttacatc |
12827730 |
T |
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| Q |
130 |
gttatcaaaaacagaccctgcaaggttt |
157 |
Q |
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| T |
12827731 |
gttatcaaaaatcgtccctgcaaggttt |
12827758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 305 - 416
Target Start/End: Original strand, 12829064 - 12829175
Alignment:
| Q |
305 |
aggtagttgaagtttcaacttctaaaactggaaagcatggacatgcaaagtgtcactttgttggtattgatatcttcactggcaaaaaacttgaagatat |
404 |
Q |
| |
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|||| ||||| ||||||||||| || || || |||||||||||||| ||||| |||||||||| |||||||| |||||| ||||| ||||||||||| |
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| T |
12829064 |
aggttgttgaggtttcaacttcaaagaccggtaagcatggacatgctaagtgccactttgttgcaattgatattttcacttctaaaaagcttgaagatat |
12829163 |
T |
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| Q |
405 |
tgttccttcttc |
416 |
Q |
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||| || ||||| |
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| T |
12829164 |
tgtgccctcttc |
12829175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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