View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19459_low_1 (Length: 811)
Name: NF19459_low_1
Description: NF19459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19459_low_1 |
 | |
|
| [»] scaffold0370 (3 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 462; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 22 - 609
Target Start/End: Complemental strand, 38633944 - 38633357
Alignment:
| Q |
22 |
ttactttggtcccacattctttccattctcttctgttttcaaaagattcatcaaatagaagctagcagaaaatagaaagcatctatcagactcatataac |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38633944 |
ttactttggtcccacattctttccattctcttctgttttcaaaagattcatcaaatagaagctagcagaaaatagaaagtatctatcagactcatataac |
38633845 |
T |
|
| Q |
122 |
actttaagacatgaataagctaatattgatctataactaaccttgatttggtcttttataattttcttcaaggattcatagttggaaatattttctttta |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38633844 |
actttaagacatgaataagctaatattgatctataactaaccttgatttggtcttttataattttcttcaaggattcatagttggaaatattttctttta |
38633745 |
T |
|
| Q |
222 |
caggatcattaccagaagctctttccatatattgaatttgaaattgttcaatttctctcaggagcttctgccaatttttcaagtaaaaactccacctaat |
321 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38633744 |
caggatcattaccggaagctctttccatatattgaatttgaaattgttcaatttctctcaggagcttctgccaatttttcaagtaaaaactccacctaat |
38633645 |
T |
|
| Q |
322 |
ctgttccaagttttcaacattccaacaaaagcaatataagtaataccaaacacagaaactccaatcttcataatgagagaaagnnnnnnnnnncaaatct |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |
|
|
| T |
38633644 |
ctgttccaagttttcaacattccaacaaaagcaatataagtaataccaaacacagaaactccaatcttcataatgaaagaaaaaaaaaaaaaacgaatct |
38633545 |
T |
|
| Q |
422 |
attaaattaccgnnnnnnnnagaacttctagtgatttgaacgaagcaacatctttctgttgaatgtttatagccctcagaatttgtttttcctcagccaa |
521 |
Q |
| |
|
|||||||||||| ||||||| ||| |||||||| ||||||||| |||||||||||||||||||| |||||||||| | ||||||||| ||||| |
|
|
| T |
38633544 |
attaaattaccgtttttttcagaacttttagcgatttgaatgaagcaacacctttctgttgaatgtttatatccctcagaatatttttttcctcggccaa |
38633445 |
T |
|
| Q |
522 |
atttttgcaactatgcagcatcaaagaattcatagactgcacaaaaataatttgaaaaccagaacaaaataaatatacgagtttcatc |
609 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
38633444 |
atttttgcaactatgtagcatcacagaattcatagactacacaaaaataatttgaaaaccagaacaatataaatatatgagtttcatc |
38633357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 600 - 801
Target Start/End: Complemental strand, 38633335 - 38633134
Alignment:
| Q |
600 |
gagtttcatcattataacatgctattaaatagaaaatacctgtatttttctaacatttttatcaggcttttccccaaaccgtcctccctttgatgctttg |
699 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38633335 |
gagtttcatcgttataacatgctattaaatagaaaatagctatatttttctaacatttttatcaggcttttccccaaaccgtcctccctttgatgctttg |
38633236 |
T |
|
| Q |
700 |
ttcatgaaattcaattcatcaagagccatatataaatccataagtatcttctctttactcgccacgcggtttctccgatccttttgaagatagtataatc |
799 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||| ||||||| ||||| |
|
|
| T |
38633235 |
ttcatgaaattcaactcatcaagagccatatataaatccctaagtatcttctccttactcgccacgcggtttctccgttccttttgtagatagtgtaatc |
38633136 |
T |
|
| Q |
800 |
ta |
801 |
Q |
| |
|
|| |
|
|
| T |
38633135 |
ta |
38633134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 33 - 276
Target Start/End: Complemental strand, 38589856 - 38589593
Alignment:
| Q |
33 |
ccacattctttccattctcttctgttttcaaaagattcatcaaatagaagctagcagaaaatagaaagcatctatcagactcat--ataacac-tttaag |
129 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||| ||| | | | ||||||||||| |||||||||| ||||||||||||| | ||||||| |||||| |
|
|
| T |
38589856 |
ccacattccatccattctcatctgttttcaaaaggttcgttacacagaagctagcacaaaatagaaaatatctatcagactctttgataacacctttaag |
38589757 |
T |
|
| Q |
130 |
acatgaataagctaa-----------------tattgatctataactaaccttgatttggtcttttataattttcttcaaggattcatagttggaaatat |
212 |
Q |
| |
|
||||||||||||||| |||| || |||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
38589756 |
acatgaataagctaacactgatgaaaagccaatattaattgataactaattttgatttggtcttttataattttcttcaaggagtcatagttgtaaatat |
38589657 |
T |
|
| Q |
213 |
tttcttttacaggatcattaccagaagctctttccatatattgaatttgaaattgttcaatttc |
276 |
Q |
| |
|
|| | || |||| |||||||| |||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
38589656 |
ttcccttcacagaatcattactagaagctctttccaaatattggatttgaaattgttcaatttc |
38589593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 452 - 738
Target Start/End: Complemental strand, 38637461 - 38637182
Alignment:
| Q |
452 |
gtgatttgaacgaagcaacatctttctgttgaatgtttatagccctcagaatttgtttttcctcagccaaatttttgcaactatgcagcatcaaagaatt |
551 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||| |||||| |||||||||||||||| || || |||||| |||||| ||||| ||| | ||| |||| |
|
|
| T |
38637461 |
gtgatttgaatgaagcaacatctttctgcagaatctttatatccctcagaatttgtttctcttcggccaaacttttgctcctatgtagcttaaaataatt |
38637362 |
T |
|
| Q |
552 |
catagactgcacaaaaataatttgaaaaccagaacaaaataaa-tatacgagtttcatcattataaca-tgctattaaatagaaaatacctgtatttttc |
649 |
Q |
| |
|
|| ||||| ||| | | |||| |||| || ||||| | ||| |||| | ||||||||| ||| | | ||||||||||| || |||||||| |
|
|
| T |
38637361 |
caaagact--acatagacgatttcaaaatcaaaacaacacaaaatatattaatttcatcatattaaaaattctattaaatag-------ctttatttttc |
38637271 |
T |
|
| Q |
650 |
taacatttttatcaggcttttccccaaaccgtcctccctttgatgctttgttcatgaaattcaattcatcaagagccatatataaatcc |
738 |
Q |
| |
|
| |||||||||||| |||||||||| |||| | |||| |||| | ||||||| ||||||||||||| |||||||| |||||| |||||| |
|
|
| T |
38637270 |
ttacatttttatcaagcttttccccgaaccattctccatttgctactttgtttatgaaattcaattgatcaagagtcatatacaaatcc |
38637182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 175 - 288
Target Start/End: Complemental strand, 38690470 - 38690357
Alignment:
| Q |
175 |
ttttataattttcttcaaggattcatagttggaaatattttcttttacaggatcattaccagaagctctttccatatattgaatttgaaattgttcaatt |
274 |
Q |
| |
|
||||||| ||| ||||||| |||||||||||||||||||| | || || ||||||||||||| ||||||||||| || | |||||||||||||||| |
|
|
| T |
38690470 |
ttttatagtttgcttcaagcattcatagttggaaatatttcccttctcaaaatcattaccagaatgtctttccatatgtttgacttgaaattgttcaatt |
38690371 |
T |
|
| Q |
275 |
tctctcaggagctt |
288 |
Q |
| |
|
||| ||| |||||| |
|
|
| T |
38690370 |
tctatcacgagctt |
38690357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 161 - 277
Target Start/End: Complemental strand, 38637836 - 38637720
Alignment:
| Q |
161 |
accttgatttggtcttttataattttcttcaaggattcatagttggaaatattttcttttacaggatcattaccagaagctctttccatatattgaattt |
260 |
Q |
| |
|
|||||||||| ||||| |||| |||||||||||||||||| ||||||||||| | || |||| ||||||||||||| ||||||||| || ||| |||| |
|
|
| T |
38637836 |
accttgattttgtcttctatacgtttcttcaaggattcataactggaaatatttgccttcacagaatcattaccagaaactctttccagatgttggattt |
38637737 |
T |
|
| Q |
261 |
gaaattgttcaatttct |
277 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
38637736 |
tgaatatttcaatttct |
38637720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 472 - 566
Target Start/End: Complemental strand, 38690107 - 38690013
Alignment:
| Q |
472 |
tctttctgttgaatgtttatagccctcagaatttgtttttcctcagccaaatttttgcaactatgcagcatcaaagaattcatagactgcacaaa |
566 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||| |||||||||||| |||||| | ||| ||| ||||| || ||| ||||| |||||| |
|
|
| T |
38690107 |
tctttctgttgaatttttatatccctcagaatttgtttctcctcagccaaacttttgcttccatgtagcttcaaataactcaaagactacacaaa |
38690013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 38637987 - 38637896
Alignment:
| Q |
25 |
ctttggtcccacattctttccattctcttctgttttcaaaagattcatcaaatagaagctagcagaaaatagaaagcatctatcagactcat |
116 |
Q |
| |
|
||||||||| |||||| |||||||||||||| || |||||||||||| |||||| |||||| |||||||||| ||| | ||| |||||| |
|
|
| T |
38637987 |
ctttggtcctacattccatccattctcttctggctttcaaagattcatcacatagaatctagcacaaaatagaaaacatatgtcacactcat |
38637896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 445 - 478
Target Start/End: Complemental strand, 38690152 - 38690119
Alignment:
| Q |
445 |
acttctagtgatttgaacgaagcaacatctttct |
478 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
38690152 |
acttctagtgatttgaatgaagcaacatctttct |
38690119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 22 - 146
Target Start/End: Original strand, 45335608 - 45335738
Alignment:
| Q |
22 |
ttactttggtcccacattctttccattctcttctgttttcaaaagattcatcaaatagaagctagcagaaaatagaaagca-tctatcagactcat--at |
118 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||||||||||||||||||||| | | |||||||||||||||||||| | |||||||||| ||| || |
|
|
| T |
45335608 |
ttactttggtgccaaattccatccattctcttctgttttcaaaagattcatcacaaaaaagctagcagaaaatagaaaaaagtctatcagacccattgat |
45335707 |
T |
|
| Q |
119 |
aaca---ctttaagacatgaataagctaata |
146 |
Q |
| |
|
|||| ||||||| |||||||||||||||| |
|
|
| T |
45335708 |
aacacacctttaaggcatgaataagctaata |
45335738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 183
Target Start/End: Original strand, 45335759 - 45335792
Alignment:
| Q |
150 |
atctataactaaccttgatttggtcttttataat |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
45335759 |
atctataactaaccttgatttggtcttttataat |
45335792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 457 - 522
Target Start/End: Complemental strand, 12449 - 12384
Alignment:
| Q |
457 |
ttgaacgaagcaacatctttctgttgaatgtttatagccctcagaatttgtttttcctcagccaaa |
522 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||| | ||||||||||||||||| ||| ||||| |
|
|
| T |
12449 |
ttgaatgaagcaacatctttctgttgaatctttatatctctcagaatttgtttttcttcacccaaa |
12384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 12853 - 12797
Alignment:
| Q |
237 |
aagctctttccatatattgaatttgaaattgttcaatttctctcaggagcttctgcc |
293 |
Q |
| |
|
||||||||||||||| ||| ||||| ||||||||||||||| ||| ||||||||||| |
|
|
| T |
12853 |
aagctctttccatatgttggatttggaattgttcaatttctatcacgagcttctgcc |
12797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 708 - 776
Target Start/End: Complemental strand, 12206 - 12138
Alignment:
| Q |
708 |
attcaattcatcaagagccatatataaatccataagtatcttctctttactcgccacgcggtttctccg |
776 |
Q |
| |
|
||||||||||||||||||||||| |||||| | ||||| ||| ||||| ||||||| | ||||||||| |
|
|
| T |
12206 |
attcaattcatcaagagccatattaaaatcccttagtattttccctttaatcgccacactgtttctccg |
12138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University