View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19459_low_13 (Length: 369)
Name: NF19459_low_13
Description: NF19459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19459_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 351
Target Start/End: Original strand, 48899755 - 48900095
Alignment:
| Q |
11 |
catcatcacattgtttcaatgacttaacaagtacatctttactttgaagttcccctttcatgttttgaaggatcatttccatttctttccgcaactcaac |
110 |
Q |
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| T |
48899755 |
catcatcacattgtttcaatgacttaacaagtacatctttactttgaagttcccctttcatgttttgaaggattatttccatttctttccgcaactcaac |
48899854 |
T |
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| Q |
111 |
catcttgctaagctcatttttagttgttgcaatcacatatagcaaaccacacccaactcctagcttaaacgacgtattgttccaatctaactgccctgta |
210 |
Q |
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| T |
48899855 |
catcttgctaagctcatttttagttgttgcaatcacatatagcaaaccacacccaactcctagcttaaacgacgtattgttccaatctaactgccctgta |
48899954 |
T |
|
| Q |
211 |
taacacccgcaccattataaaattaacttcaaacccaataaatgggtaagacagtttttcttttcatcacaaacaagaaaacaaacatagatagcacann |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48899955 |
taacacccgcaccattataaaattaacttcaaacccaataaatgggtaagacagtttttcttttcatcacaaacaagaaaacaaacatagatagcacatt |
48900054 |
T |
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| Q |
311 |
nnnnnnagaaaaattccaaaataatttcactagaaaaaagt |
351 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
48900055 |
ttttttagaaaaattccaaaataatttcactagaaaaaagt |
48900095 |
T |
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