View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19459_low_15 (Length: 349)
Name: NF19459_low_15
Description: NF19459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19459_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 1965580 - 1965242
Alignment:
| Q |
1 |
gatgtaatatttgagacaatgatctgatcatgtctgtttgacaaaaacaagagaagcgtgcctcaaaacttgactcatttgttttcctttatttttgtca |
100 |
Q |
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| T |
1965580 |
gatgtaatatttgagacaatgatctgatcatgtctgtttgacaaaaacaagagaagcgtgcctcaaaactcgactcatttgttttcctttatttttgtca |
1965481 |
T |
|
| Q |
101 |
aaccaggttcgatcaagtcaccgtctcaagctcaaggccgaaaagaaccatgagcttatacttctagaaggcgatctcggtcattatttggatttcgagc |
200 |
Q |
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|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1965480 |
aatcaggttcgatcaagtcaccatctcaagctcaaggccgaaaagaaccatgagcttatacttctagaagacgatctcggtcattatttggatttcgagc |
1965381 |
T |
|
| Q |
201 |
aattttcaagtactagtccacaatggacgacccatcaatttaaactaagtaaaacaatatgaaacaaaaaagagaaataatagaactaacttggtctaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1965380 |
aattttcaagtactagtccacaatggacgacccatcaatttaaactaagtaaaacattatgaaacaaaaaagagaaataatagaactaacttggtctaat |
1965281 |
T |
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| Q |
301 |
ttttcaaaagagtcggcccttctaggaacccaacctttg |
339 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
1965280 |
ttttcaaaagagtcggcccttctaggaacccaacctttg |
1965242 |
T |
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