View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19459_low_19 (Length: 307)
Name: NF19459_low_19
Description: NF19459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19459_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 300
Target Start/End: Complemental strand, 25884684 - 25884404
Alignment:
| Q |
20 |
aaggggatcatgctgctgttgtaggaactgttggttcagggaagtcttcattattggcttctgtgttgggagaaatgttcaagatctcaggaaaggtata |
119 |
Q |
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| T |
25884684 |
aaggggatcatgctgctgttgtaggaactgttggttcagggaagtcttcattattggcttctgtgttgggagaaatgttcaagatctcaggacaggtata |
25884585 |
T |
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| Q |
120 |
ttgcttgactacactttaaaaatgcatttaaaaatattttattgatttttgattctgtgaaaattggttctatgaaaatttacttgtaaaattgttcagg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25884584 |
ttgcttgactacactttaaaaatgcatttaaaaatattttattgatttttgattctgtgaaaattggttctatgaaaatttacttgtaaaattgttcagg |
25884485 |
T |
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| Q |
220 |
tcagagtttgtggaacgacggcgtacgtggcacaaacatcatggattcagaatgcaaccatcaaagaaaacatattcttcg |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25884484 |
tcaaagtttgtggaacgacggcgtacgtggcacaaacatcatggattcagaatgcaaccatcaaagaaaacatattgttcg |
25884404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 14320002 - 14319904
Alignment:
| Q |
20 |
aaggggatcatgctgctgttgtaggaactgttggttcagggaagtcttcattattggcttctgtgttgggagaaatgttcaagatctcaggaaaggtat |
118 |
Q |
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| T |
14320002 |
aaggggaccgtgctgctattgtaggaactgttggttcaggcaagtcttcattattggcttctgtgttgggagaaatgttcaagatctcaggaaaggtat |
14319904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 14303611 - 14303513
Alignment:
| Q |
20 |
aaggggatcatgctgctgttgtaggaactgttggttcagggaagtcttcattattggcttctgtgttgggagaaatgttcaagatctcaggaaaggtat |
118 |
Q |
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||||||| |||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14303611 |
aaggggaccatgctgctgttgtaggaactgttggatcaggcaagtcttcattactggcttctgtgttgggggaaatgttcaagatctcaggaaaggtat |
14303513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 14281853 - 14281755
Alignment:
| Q |
20 |
aaggggatcatgctgctgttgtaggaactgttggttcagggaagtcttcattattggcttctgtgttgggagaaatgttcaagatctcaggaaaggtat |
118 |
Q |
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||||||| ||||||||| |||||||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14281853 |
aaggggaccatgctgctattgtaggaacagttggatcgggcaagtcttcattattggcttctgtgttgggagaaatgttcaagatctcaggaaaggtat |
14281755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 199 - 295
Target Start/End: Complemental strand, 14319324 - 14319228
Alignment:
| Q |
199 |
ttacttgtaaaattgttcaggtcagagtttgtggaacgacggcgtacgtggcacaaacatcatggattcagaatgcaaccatcaaagaaaacatatt |
295 |
Q |
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||||||||||||| | ||||||||||||||||| |||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14319324 |
ttacttgtaaaatcttacaggtcagagtttgtgggacgacggcatatgtagcacaaacatcatggattcagaatgcaaccatcaaagaaaacatatt |
14319228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 216 - 295
Target Start/End: Complemental strand, 14302859 - 14302780
Alignment:
| Q |
216 |
caggtcagagtttgtggaacgacggcgtacgtggcacaaacatcatggattcagaatgcaaccatcaaagaaaacatatt |
295 |
Q |
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| T |
14302859 |
caggttagagtttgtgggacgacggcatatgtagcacaaacatcatggattcagaatgcaaccatcaaagaaaacatatt |
14302780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 199 - 295
Target Start/End: Complemental strand, 14281492 - 14281396
Alignment:
| Q |
199 |
ttacttgtaaaattgttcaggtcagagtttgtggaacgacggcgtacgtggcacaaacatcatggattcagaatgcaaccatcaaagaaaacatatt |
295 |
Q |
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||||||||||||| | |||| ||||||||||| |||||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14281492 |
ttacttgtaaaatattacaggctagagtttgtgggacgacggcatatgtagcacagacatcatggattcagaatgcaaccatcaaagaaaacatatt |
14281396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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