View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19459_low_21 (Length: 262)
Name: NF19459_low_21
Description: NF19459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19459_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 2 - 244
Target Start/End: Complemental strand, 34966994 - 34966752
Alignment:
| Q |
2 |
tattagtgtgttataaaatgaagacagttgttgcttgaagaaaagggtagcttcagttgaagtccaaatggtactgaatggtataaataggttgtaattt |
101 |
Q |
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| T |
34966994 |
tattagtgtgttataaaatgaagacagttgttgcttgaagaaaagggtagcttcaattgaagtccaaatggtactgaatggtataaataggttgtaattt |
34966895 |
T |
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| Q |
102 |
gtagctgtgttgtacagagacagatatgtaatttttaccatttgaaagagtgagtttgattaatcagagagaataatagttgagcaagttgtggtacaaa |
201 |
Q |
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| T |
34966894 |
gtagctgtgttgtacagagacagatatgtaaattttaccatttgaaagagtgagtttgattaatcagagagaataatagttgagcaagttgtggtacaaa |
34966795 |
T |
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| Q |
202 |
tagcaatatcagagatatgattttgaaatgattaattggcttt |
244 |
Q |
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| T |
34966794 |
tagcaatatcagagatatgattttgaaatgattaattggcttt |
34966752 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 18425127 - 18425093
Alignment:
| Q |
206 |
aatatcagagatatgattttgaaatgattaattgg |
240 |
Q |
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| T |
18425127 |
aatatcagagatatgattttgaaatgattgattgg |
18425093 |
T |
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