View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19459_low_22 (Length: 258)
Name: NF19459_low_22
Description: NF19459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19459_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 66 - 240
Target Start/End: Complemental strand, 8428068 - 8427894
Alignment:
| Q |
66 |
agtacaatatcaaaagaattggtaacgattttgccgacaattacctataaaggtttagacatcataatggttgtagattggtggttttgatttttacatt |
165 |
Q |
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| T |
8428068 |
agtacaatatcaaaagaattggtaacgattttgccgacaattacctataaaggtttagacatcataatggttgtagattggtggtttagatttttacatt |
8427969 |
T |
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| Q |
166 |
agagaaaaattggtcaatcaacagcttgttgacttggtccaattaggagaaaaaggtcgacaaattgaacaactt |
240 |
Q |
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| T |
8427968 |
agagaaaaattggtcaatcaacatcttgttgacttggtccaattaggagaaaaagttcgacaaattgaacaactt |
8427894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 8402396 - 8402347
Alignment:
| Q |
77 |
aaaagaattggtaacgattttgccgacaattacctataaaggtttagaca |
126 |
Q |
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| T |
8402396 |
aaaaaaattagtaacgattttgccgacaattacctatagaggtttagaca |
8402347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 8402290 - 8402215
Alignment:
| Q |
143 |
ttggtggttttgatttttacattagagaaaaattggtcaatcaacagcttgttgacttggtccaattaggagaaaaa |
219 |
Q |
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| T |
8402290 |
ttggtggtttaaatttttacattagag-aaaattggttgaccaacatcttgttgacttagcccaatttggagaaaaa |
8402215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 21262564 - 21262598
Alignment:
| Q |
4 |
atagtcatcttcttttaatacgcttctacatttaa |
38 |
Q |
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| T |
21262564 |
atagtcatcttcatttaatacgcttctacatttaa |
21262598 |
T |
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