View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19459_low_24 (Length: 250)
Name: NF19459_low_24
Description: NF19459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19459_low_24 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 121 - 250
Target Start/End: Complemental strand, 8430210 - 8430081
Alignment:
| Q |
121 |
atccaaaattttgaagcatcttgagcagatgtttgctttgtatattgtagatgtgtaaaatacattcacctcctatatattgagttagaaatgcctaata |
220 |
Q |
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| T |
8430210 |
atccaaaattttgaagcatctggagcagatgtttgctttgtatattgtagatgtgtaaaacacattcacctcctatatattgagttagaaatgcctaata |
8430111 |
T |
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| Q |
221 |
atctaatgcagaggagacaaacacacgaga |
250 |
Q |
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| T |
8430110 |
atctaatgcagaggagacaaacacacgaga |
8430081 |
T |
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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 8430483 - 8430431
Alignment:
| Q |
13 |
aatatccactttgatgaatatcaaaccttatggagtttttctgcatgatgtgc |
65 |
Q |
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| T |
8430483 |
aatattcactttgatgaatatcaaaccttatggagtttttctgcatgatgtgc |
8430431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 8430272 - 8430232
Alignment:
| Q |
62 |
gtgctagaatttgagacattaagatttataactaaattaca |
102 |
Q |
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| T |
8430272 |
gtgctagaatttgaaacattaagatttataactaaattaca |
8430232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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