View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19459_low_25 (Length: 246)

Name: NF19459_low_25
Description: NF19459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19459_low_25
NF19459_low_25
[»] chr1 (2 HSPs)
chr1 (1-231)||(7099672-7099902)
chr1 (1-225)||(7581350-7581574)
[»] chr5 (17 HSPs)
chr5 (1-225)||(17983158-17983382)
chr5 (1-231)||(30206773-30207003)
chr5 (1-215)||(30713066-30713280)
chr5 (1-215)||(29853562-29853776)
chr5 (1-215)||(29872425-29872639)
chr5 (1-215)||(30436067-30436281)
chr5 (33-215)||(30483684-30483866)
chr5 (33-215)||(30338166-30338348)
chr5 (1-231)||(30521250-30521480)
chr5 (1-231)||(30561590-30561820)
chr5 (33-173)||(30242058-30242198)
chr5 (25-179)||(30060644-30060798)
chr5 (1-179)||(30749894-30750072)
chr5 (27-215)||(30400351-30400539)
chr5 (32-218)||(30475657-30475843)
chr5 (103-162)||(30330849-30330908)
chr5 (28-65)||(15357481-15357518)
[»] chr4 (3 HSPs)
chr4 (1-218)||(13616848-13617064)
chr4 (1-197)||(20296241-20296437)
chr4 (10-182)||(52352219-52352391)
[»] chr7 (1 HSPs)
chr7 (33-215)||(26707615-26707797)
[»] chr3 (1 HSPs)
chr3 (1-197)||(25293583-25293779)
[»] chr6 (3 HSPs)
chr6 (24-62)||(17069171-17069209)
chr6 (31-76)||(16843478-16843523)
chr6 (24-76)||(16987119-16987171)


Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 7099672 - 7099902
Alignment:
Q  1 acatcttcaacctccaaattttttctagatgaaataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7099672 acatcttcaacctccaaattttttctagatgaaataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaata 7099771  T
Q  101 tagcacaaaaagcgaaacattgttttaaggttggtgataaatggaagtagctcaacctcaaagctggcaaaatagaattctcgtgcggtaaagcccagat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7099772 tagcacaaaaagcgaaacattgttttaaggttggtgataaatggaagtagctcaacctcaaagctggcaaaatagaattctcgtgcggtaaagcccagat 7099871  T
Q  201 ctcactctctttaatttctaaccatgctttt 231  Q
    |||||||||||||||||||||||||||||||    
T  7099872 ctcactctctttaatttctaaccatgctttt 7099902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 7581574 - 7581350
Alignment:
Q  1 acatcttcaacctccaaattttttctagatgaaataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaata 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  7581574 acatcttcaacctccaaattttttctagatgaaataaattcattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttaggaaata 7581475  T
Q  101 tagcacaaaaagcgaaacattgttttaaggttggtgataaatggaagtagctcaacctcaaagctggcaaaatagaattctcgtgcggtaaagcccagat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||| |||||||||| ||||||||| |||| |     
T  7581474 tagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaatctcagagctggcaaagtagaattctcatgcggtaaatcccaaag 7581375  T
Q  201 ctcactctctttaatttctaaccat 225  Q
    ||| |||||||||||||| ||||||    
T  7581374 ctcgctctctttaatttcaaaccat 7581350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 17983158 - 17983382
Alignment:
Q  1 acatcttcaacctccaaattttttctagatgaaataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaata 100  Q
    |||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||| | |||||| |||||||||| ||  |||||| ||||||    
T  17983158 acatcttcaacctccaaattttttctagatgagataaatttattagccatccaaagatgaattagttcttctttcatgatttctgcttctttgggaaata 17983257  T
Q  101 tagcacaaaaagcgaaacattgttttaaggttggtgataaatggaagtagctcaacctcaaagctggcaaaatagaattctcgtgcggtaaagcccagat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||| |||||||||||||| ||||||||||||||||     
T  17983258 tagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaaccttagagctgggaaaatagaattctcatgcggtaaagcccagag 17983357  T
Q  201 ctcactctctttaatttctaaccat 225  Q
    ||| |||||||||||||| ||||||    
T  17983358 ctcgctctctttaatttcaaaccat 17983382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 30206773 - 30207003
Alignment:
Q  1 acatcttcaacctccaaattttttctagatgaaataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaata 100  Q
    |||||||||||||||| |||||  |||||| |||||||| |||||||||||||||||||||||||||||||| ||| || || |||||||||| |||| |    
T  30206773 acatcttcaacctccatattttccctagataaaataaattcattagccatccaaagatgaatcaattcttccctcacgaattctgtatctttgggaaaca 30206872  T
Q  101 tagcacaaaaagcgaaacattgttttaaggttggtgataaatggaagtagctcaacctcaaagctggcaaaatagaattctcgtgcggtaaagcccagat 200  Q
    |||||||||||||||||||  | ||||||||||| | |||||| |||||||||||||||||||| || |||||| ||||||| || ||||||||||| |     
T  30206873 tagcacaaaaagcgaaacaccgctttaaggttggagttaaatgaaagtagctcaacctcaaagcaggtaaaatataattctcatgtggtaaagcccaaag 30206972  T
Q  201 ctcactctctttaatttctaaccatgctttt 231  Q
     ||||||||||||||||| | |||| |||||    
T  30206973 ttcactctctttaatttcaagccattctttt 30207003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 30713280 - 30713066
Alignment:
Q  1 acatcttcaacctccaaattttttctagatgaaataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaata 100  Q
    ||||||||||| ||||||||     |||||||||||||||||||||||||||||||  ||||||||||||| || | ||||| | |||| ||| ||||||    
T  30713280 acatcttcaacgtccaaattacccatagatgaaataaatccattagccatccaaagtcgaatcaattcttcttttaggatttctctatccttgggaaata 30713181  T
Q  101 tagcacaaaaagcgaaacattgttttaaggttggtgataaatggaagtagctcaacctcaaagctggcaaaatagaattctcgtgcggtaaagcccagat 200  Q
    |||||||||||| ||||||||| |||| ||||||||||||||  ||||| |||| ||||||||| |||||||||||||| || || ||||||||||| |     
T  30713180 tagcacaaaaagagaaacattgctttagggttggtgataaataaaagtaactcagcctcaaagcaggcaaaatagaattttcttgtggtaaagcccaaag 30713081  T
Q  201 ctcactctctttaat 215  Q
    |||||| ||||||||    
T  30713080 ctcactgtctttaat 30713066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 29853562 - 29853776
Alignment:
Q  1 acatcttcaacctccaaattttttctagatgaaataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaata 100  Q
    ||||||||||| ||||||||     ||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| |  ||| ||| ||||||    
T  29853562 acatcttcaacgtccaaattacccttagatgaaataaatccattagccatccaaagttgaatcaattcttctttcaggatttctccatccttgggaaata 29853661  T
Q  101 tagcacaaaaagcgaaacattgttttaaggttggtgataaatggaagtagctcaacctcaaagctggcaaaatagaattctcgtgcggtaaagcccagat 200  Q
    |||| ||||| | |||||||||||||| |||||||| |||||  ||||| ||||||||||||||  ||||||||||||| || || ||||||||||| |     
T  29853662 tagcgcaaaaggagaaacattgttttagggttggtgttaaataaaagtaactcaacctcaaagcaagcaaaatagaattttcttgtggtaaagcccaaag 29853761  T
Q  201 ctcactctctttaat 215  Q
    |||||| ||||||||    
T  29853762 ctcactgtctttaat 29853776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 29872425 - 29872639
Alignment:
Q  1 acatcttcaacctccaaattttttctagatgaaataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaata 100  Q
    ||||||||||| ||||||||     |||||||||||||| |||||||||||||||| |||||||||||||| |||| ||||||| |||| ||| ||||||    
T  29872425 acatcttcaacgtccaaattacccatagatgaaataaattcattagccatccaaagttgaatcaattcttctttcaggatttttctatccttgggaaata 29872524  T
Q  101 tagcacaaaaagcgaaacattgttttaaggttggtgataaatggaagtagctcaacctcaaagctggcaaaatagaattctcgtgcggtaaagcccagat 200  Q
    |||| ||||||| ||||||||| |||| |||||||| |||||  ||||| ||||||||||||||  ||||||||||||| || |||| ||||||||| |     
T  29872525 tagcgcaaaaagagaaacattgctttagggttggtgttaaataaaagtaactcaacctcaaagcaagcaaaatagaattttcttgcgataaagcccaaag 29872624  T
Q  201 ctcactctctttaat 215  Q
    |||||| || |||||    
T  29872625 ctcactgtccttaat 29872639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 30436067 - 30436281
Alignment:
Q  1 acatcttcaacctccaaattttttctagatgaaataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaata 100  Q
    ||||||||||| ||||||||     |||||||||||||| ||||||||||||||||  ||||||||||||| || | ||||| | |||| ||| ||||||    
T  30436067 acatcttcaacgtccaaattacccatagatgaaataaattcattagccatccaaagtcgaatcaattcttcttttaggatttctctatccttgggaaata 30436166  T
Q  101 tagcacaaaaagcgaaacattgttttaaggttggtgataaatggaagtagctcaacctcaaagctggcaaaatagaattctcgtgcggtaaagcccagat 200  Q
    |||||||||||| ||||||||| |||| |||||||| |||||  ||||| ||||| |||||||| |||||||||||||| || || ||||||||||| |     
T  30436167 tagcacaaaaagagaaacattgctttagggttggtgttaaataaaagtaactcaatctcaaagcgggcaaaatagaattttcttgtggtaaagcccaaag 30436266  T
Q  201 ctcactctctttaat 215  Q
    |||||| ||||||||    
T  30436267 ctcactgtctttaat 30436281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 33 - 215
Target Start/End: Original strand, 30483684 - 30483866
Alignment:
Q  33 aataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaatatagcacaaaaagcgaaacattgttttaaggtt 132  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||| | |||||||| |||||||||||||||| | ||||||||| |||| ||||    
T  30483684 aataaatccattagccatccaaagctgaatcaattcttccttcaggatttctctatctttgggaaatatagcacaaaaggagaaacattgctttagggtt 30483783  T
Q  133 ggtgataaatggaagtagctcaacctcaaagctggcaaaatagaattctcgtgcggtaaagcccagatctcactctctttaat 215  Q
    |||| |||||  ||||| |||||||||||||| || |||||||| || || || |||||| |||| | |||||| ||||||||    
T  30483784 ggtgttaaataaaagtaactcaacctcaaagcaggtaaaatagatttttcatgtggtaaatcccaaagctcactgtctttaat 30483866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 33 - 215
Target Start/End: Complemental strand, 30338348 - 30338166
Alignment:
Q  33 aataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaatatagcacaaaaagcgaaacattgttttaaggtt 132  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||| | |||||||| |||||||||||||||| | ||||||||| |||| ||||    
T  30338348 aataaatccattagccatccaaagttgaatcaattcttccttcaggatttctctatctttgggaaatatagcacaaaaggagaaacattgctttagggtt 30338249  T
Q  133 ggtgataaatggaagtagctcaacctcaaagctggcaaaatagaattctcgtgcggtaaagcccagatctcactctctttaat 215  Q
    |||| |||||  ||||| ||||| |||||||| || |||||||| || || || |||||| |||| | |||||| ||||||||    
T  30338248 ggtgttaaataaaagtaactcaaactcaaagcaggtaaaatagatttttcatgtggtaaatcccaaagctcactgtctttaat 30338166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 30521480 - 30521250
Alignment:
Q  1 acatcttcaacctccaaattttttctagatgaaataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaata 100  Q
    |||||||| ||||| |||||||  || ||||| |||||||| || || ||||| |||||||| || ||| |||||||||||| | |||||||| |||| |    
T  30521480 acatcttctacctctaaattttcccttgatgatataaatccgttggcgatccagagatgaattaaatctcccttcatgatttctatatctttgggaaaca 30521381  T
Q  101 tagcacaaaaagcgaaacattgttttaaggttggtgataaatggaagtagctcaacctcaaagctggcaaaatagaattctcgtgcggtaaagcccagat 200  Q
    | |||||||||| |||||||||||||||||||||   |||||| |||||||||||||| ||||| ||||||||||||||||| | |||||||| ||| ||    
T  30521380 tggcacaaaaagtgaaacattgttttaaggttgggtttaaatgaaagtagctcaaccttaaagcaggcaaaatagaattctcattcggtaaagaccaaat 30521281  T
Q  201 ctcactctctttaatttctaaccatgctttt 231  Q
    |   || ||||||||||| | |||| |||||    
T  30521280 cctgctatctttaatttcaagccattctttt 30521250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 30561820 - 30561590
Alignment:
Q  1 acatcttcaacctccaaattttttctagatgaaataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaata 100  Q
    |||||||| ||||| |||||||  || ||||| |||||||| || || ||||| |||||||| || ||| |||||||||||| | |||||||| |||| |    
T  30561820 acatcttctacctctaaattttcccttgatgatataaatccgttggcgatccagagatgaattaaatctcccttcatgatttctatatctttgggaaaca 30561721  T
Q  101 tagcacaaaaagcgaaacattgttttaaggttggtgataaatggaagtagctcaacctcaaagctggcaaaatagaattctcgtgcggtaaagcccagat 200  Q
    | |||||||||| |||||||||||||||||||||   |||||| |||||||||||||| ||||| ||||||||||||||||| | |||||||| ||| ||    
T  30561720 tggcacaaaaagtgaaacattgttttaaggttgggtttaaatgaaagtagctcaaccttaaagcaggcaaaatagaattctcattcggtaaagaccaaat 30561621  T
Q  201 ctcactctctttaatttctaaccatgctttt 231  Q
    |   || ||||||||||| | |||| |||||    
T  30561620 cctgctatctttaatttcaagccattctttt 30561590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 33 - 173
Target Start/End: Complemental strand, 30242198 - 30242058
Alignment:
Q  33 aataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaatatagcacaaaaagcgaaacattgttttaaggtt 132  Q
    |||||||||||||||||| || || ||||||||||||||||||| ||||| |  ||||||| |||||||||||||||||| ||||||||||||||  |||    
T  30242198 aataaatccattagccattcagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaacattgttttagagtt 30242099  T
Q  133 ggtgataaatggaagtagctcaacctcaaagctggcaaaat 173  Q
    |||| |||||  ||||| |||||||||||||| ||||||||    
T  30242098 ggtgttaaataaaagtaactcaacctcaaagcaggcaaaat 30242058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 179
Target Start/End: Original strand, 30060644 - 30060798
Alignment:
Q  25 ctagatgaaataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaatatagcacaaaaagcgaaacattgtt 124  Q
    ||||||||||| ||||||||||||||||||||   ||||||||||||||| | ||||| || ||||||| |||||||||||||||||| |||||||||||    
T  30060644 ctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgtt 30060743  T
Q  125 ttaaggttggtgataaatggaagtagctcaacctcaaagctggcaaaatagaatt 179  Q
    ||| || ||  | |||||  ||||| |||||||||||||| |||||||| |||||    
T  30060744 ttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaatt 30060798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 30749894 - 30750072
Alignment:
Q  1 acatcttcaacctccaaattttttctagatgaaataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaata 100  Q
    |||||||||||||||| |||    ||||||||||| ||||||||||||||||||||   |||||||| |||||| | ||||| || ||||||| ||||||    
T  30749894 acatcttcaacctccatattacccctagatgaaatcaatccattagccatccaaagccaaatcaatttttcctttaggatttctgcatctttgggaaata 30749993  T
Q  101 tagcacaaaaagcgaaacattgttttaaggttggtgataaatggaagtagctcaacctcaaagctggcaaaatagaatt 179  Q
    |||||||||||| |||||||||||||| || ||  | |||||  ||||| |||||||||||||| |||||||| |||||    
T  30749994 tagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaatt 30750072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 215
Target Start/End: Original strand, 30400351 - 30400539
Alignment:
Q  27 agatgaaataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaatatagcacaaaaagcgaaacattgtttt 126  Q
    ||||||||| |||||||||||||||||||| |||||||||||||| |||| |||||   |||| ||| |||||||||||||||||| ||||||||| |||    
T  30400351 agatgaaatcaatccattagccatccaaagctgaatcaattcttctttcaagatttccctatccttgggaaatatagcacaaaaagagaaacattgcttt 30400450  T
Q  127 aaggttggtgataaatggaagtagctcaacctcaaagctggcaaaatagaattctcgtgcggtaaagcccagatctcactctctttaat 215  Q
    | ||| |||| |||||  ||||| |||||||||||||   |||||||| |||| || |  ||||||||||| | |||| | ||||||||    
T  30400451 agggtcggtgttaaataaaagtaactcaacctcaaagaacgcaaaatataattttcttctggtaaagcccaaagctcagtgtctttaat 30400539  T

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Target: chr5; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 218
Target Start/End: Original strand, 30475657 - 30475843
Alignment:
Q  32 aaataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaatatagcacaaaaagcgaaacattgttttaaggt 131  Q
    |||||||||||||  ||||||| ||||||||||| |||||||| |  ||||   |||||||| ||||||| ||||||||||| |||||  | ||||||||    
T  30475657 aaataaatccattgcccatccatagatgaatcaaatcttcctttacaatttccatatctttgggaaatatcgcacaaaaagcaaaacaccgctttaaggt 30475756  T
Q  132 tggtgataaatggaagtagctcaacctcaaagctggcaaaatagaattctcgtgcggtaaagcccagatctcactctctttaatttc 218  Q
     |||| |||||| |||||||| |||||||| ||||||||||| |||||||| |  ||||| | |||||  | ||| |||||||||||    
T  30475757 cggtgttaaatgaaagtagcttaacctcaaggctggcaaaatggaattctcatatggtaaggtccagagattactgtctttaatttc 30475843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 162
Target Start/End: Complemental strand, 30330908 - 30330849
Alignment:
Q  103 gcacaaaaagcgaaacattgttttaaggttggtgataaatggaagtagctcaacctcaaa 162  Q
    ||||||||||| ||||| || ||||||||||| | |||||| ||||||||||||||||||    
T  30330908 gcacaaaaagcaaaacactgctttaaggttggagttaaatgaaagtagctcaacctcaaa 30330849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 15357481 - 15357518
Alignment:
Q  28 gatgaaataaatccattagccatccaaagatgaatcaa 65  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  15357481 gatgaaataaatccattagccatccaaagctcaatcaa 15357518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 13616848 - 13617064
Alignment:
Q  1 acatcttcaacctccaaattttttctagatgaaataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaata 100  Q
    ||||||||||||||||| |||||| || ||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||  ||||||    
T  13616848 acatcttcaacctccaatttttttttacatgaaataaattcattagccatccaaagatgaatcaattcttcctttgtgatttttgtatctttaggaaata 13616947  T
Q  101 tagcacaaaaagcgaaacattgttttaaggttggtgataaatggaagtagctcaacctcaaagctggcaaaatagaattctcgtgcggtaaagcccagat 200  Q
     | |||| |||||||| |||||||| |||||||| ||||||| |||||| |||| ||||||| | || |||||||||||||| | | ||||| |||| |     
T  13616948 caacacagaaagcgaatcattgtttaaaggttggcgataaat-gaagtaactcagcctcaaatcaggaaaaatagaattctcataccgtaaatcccaaag 13617046  T
Q  201 ctcactctctttaatttc 218  Q
    ||| |||||| |||||||    
T  13617047 ctcgctctctctaatttc 13617064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 20296437 - 20296241
Alignment:
Q  1 acatcttcaacctccaaattttttctagatgaaataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaata 100  Q
    ||||||||||| ||||||||     |||||||||| |||||||||||||||||||| |||||||||||||| |||| ||||| | |||| ||  ||||||    
T  20296437 acatcttcaacgtccaaattacccatagatgaaattaatccattagccatccaaagctgaatcaattcttctttcaagatttctctatccttaggaaata 20296338  T
Q  101 tagcacaaaaagcgaaacattgttttaaggttggtgataaatggaagtagctcaacctcaaagctggcaaaatagaattctcgtgcggtaaagccca 197  Q
    |||||||||||| ||||||||| ||||  ||||||| |||||  ||||| |||| ||||||||| ||||||||||| || || || |||||||||||    
T  20296337 tagcacaaaaagagaaacattgctttagagttggtgttaaataaaagtaactcagcctcaaagcaggcaaaatagatttttcttgtggtaaagccca 20296241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 10 - 182
Target Start/End: Original strand, 52352219 - 52352391
Alignment:
Q  10 acctccaaattttttctagatgaaataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaatatagcacaaa 109  Q
    |||||||||||||   |||| |||||||||||||| |||||||| ||||||||||| || || || | |||||  ||||||||| ||||||| ||||| |    
T  52352219 acctccaaattttccttagacgaaataaatccattggccatccagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaatatggcacaga 52352318  T
Q  110 aagcgaaacattgttttaaggttggtgataaatggaagtagctcaacctcaaagctggcaaaatagaattctc 182  Q
    ||| ||||||||||||||||||||  | ||||||||| || ||||||||||| || |||||||||||||||||    
T  52352319 aagagaaacattgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctc 52352391  T

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Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 33 - 215
Target Start/End: Original strand, 26707615 - 26707797
Alignment:
Q  33 aataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaatatagcacaaaaagcgaaacattgttttaaggtt 132  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||| | |||||||| |||||||||||||||||| ||||||||| |||| ||||    
T  26707615 aataaatccattagccatccaaagttgaatcaattcttccttcaagatttctctatctttgggaaatatagcacaaaaagagaaacattgctttagggtt 26707714  T
Q  133 ggtgataaatggaagtagctcaacctcaaagctggcaaaatagaattctcgtgcggtaaagcccagatctcactctctttaat 215  Q
    |||| |||||  ||||| |||||||||||||| ||||||||||| || || || |||||| |||| | |||||| ||||||||    
T  26707715 ggtgttaaataaaagtaactcaacctcaaagcaggcaaaatagatttttcttgtggtaaatcccaaagctcactgtctttaat 26707797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 25293779 - 25293583
Alignment:
Q  1 acatcttcaacctccaaattttttctagatgaaataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaata 100  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||   |||||||||||||||  |||| |    
T  25293779 acatcttcaacctccaaattttccctagatgaaataaatccattagccatccaaagatgagtcaattcttccttatcgatttttgtatcttttggaaaca 25293680  T
Q  101 tagcacaaaaagcgaaacattgttttaaggttggtgataaatggaagtagctcaacctcaaagctggcaaaatagaattctcgtgcggtaaagccca 197  Q
    ||||||||||||| |||||| | |||||||| || | |||||  ||||||||||||| ||| |  || |||||||||||||| ||  ||||||||||    
T  25293679 tagcacaaaaagcaaaacatcgctttaaggtcggagttaaataaaagtagctcaaccacaaggaaggaaaaatagaattctcttgttgtaaagccca 25293583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 17069171 - 17069209
Alignment:
Q  24 tctagatgaaataaatccattagccatccaaagatgaat 62  Q
    |||||||| || |||||||||||||||||||||||||||    
T  17069171 tctagatgtaacaaatccattagccatccaaagatgaat 17069209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 16843478 - 16843523
Alignment:
Q  31 gaaataaatccattagccatccaaagatgaatcaattcttccttca 76  Q
    |||||||||||||| ||||||||||||||||| |  ||||||||||    
T  16843478 gaaataaatccatttgccatccaaagatgaattacatcttccttca 16843523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 16987119 - 16987171
Alignment:
Q  24 tctagatgaaataaatccattagccatccaaagatgaatcaattcttccttca 76  Q
    |||||||| || || |||||||||||||||||||||||| |  ||||||||||    
T  16987119 tctagatgtaacaagtccattagccatccaaagatgaatgagatcttccttca 16987171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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