View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19459_low_26 (Length: 240)
Name: NF19459_low_26
Description: NF19459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19459_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 1325155 - 1325362
Alignment:
| Q |
20 |
tttagaacatttatcggatcacaatccacgtttgtaacttatagcctctagtagaattttagagacctagttaatctctaacaaacattactcatttctc |
119 |
Q |
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| T |
1325155 |
tttagaacatttatcggatcacaatccacgtttgtaacttatagcctctagtagaattttagagacctagttaatctctaacaaacattactcatttctc |
1325254 |
T |
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| Q |
120 |
tctcttcttttttcatcattgcactctaattgcttccattgttctcaaccatcccatgaccacaccacaaaatttcatgtaaggtaaaattcttatgtga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1325255 |
tctcttcttttttcatcattgcactctaattgcttccattgttctcaaccatcccatgaccacaccacaaaatttcttgtaaggtaaaattcttatgtga |
1325354 |
T |
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| Q |
220 |
cctttgct |
227 |
Q |
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|||||||| |
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| T |
1325355 |
cctttgct |
1325362 |
T |
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