View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19459_low_28 (Length: 207)
Name: NF19459_low_28
Description: NF19459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19459_low_28 |
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| [»] scaffold0049 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 43433107 - 43433286
Alignment:
| Q |
14 |
cacagataaaacagttgcaagcatgatcgaccagaacacaacaatggttggtattcgattcttgcgtcccataagacctttaaggaaagggaagagatga |
113 |
Q |
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| T |
43433107 |
cacagataaaacagttgcaagcatgatcgaccagaacacaacaatggttggtattcgattcttgcgtcccataagacctttaaggaaagggaagagatga |
43433206 |
T |
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| Q |
114 |
atgattacccaaaacgcaaagaaaagtttaccaaagatcggaccagatgatcggtaaccagcattcacagcatatgatac |
193 |
Q |
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| T |
43433207 |
atgattacccaaaacgcaaagaaaagtttaccaaagatcggaccagatgatcggtaaccagcattcacagcatatgatac |
43433286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 39 - 173
Target Start/End: Original strand, 13822530 - 13822664
Alignment:
| Q |
39 |
atcgaccagaacacaacaatggttggtattcgattcttgcgtcccataagacctttaaggaaagggaagagatgaatgattacccaaaacgcaaagaaaa |
138 |
Q |
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| T |
13822530 |
atcgaccagaccacaacaatggttggcgttcgattctggcgtcccataagacctttaaggaaagggtagagatgaacgataacccaaaatgcaaagaaaa |
13822629 |
T |
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| Q |
139 |
gtttaccaaagatcggaccagatgatcggtaacca |
173 |
Q |
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| T |
13822630 |
gtttaccaaagagtggaccccatgattggtaacca |
13822664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 9482709 - 9482616
Alignment:
| Q |
57 |
atggttggtattcgattcttgcgtcccataagacctttaaggaaagggaagagatgaatgattacccaaaacgcaaagaaaagtttaccaaaga |
150 |
Q |
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| T |
9482709 |
atggttggcgttcggttctggcgtcccataagacctttaaggaaggggtagagatggatgatcacccaaaatgcaaagaaaagtttaccaaaga |
9482616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 65218 - 65156
Alignment:
| Q |
88 |
gacctttaaggaaagggaagagatgaatgattacccaaaacgcaaagaaaagtttaccaaaga |
150 |
Q |
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| T |
65218 |
gacctttaaggaaagggtagagacgaatgatgacccaaaatacaaagaagagtttaccaaaga |
65156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 65379 - 65444
Alignment:
| Q |
82 |
ccataagacctttaaggaaagggaagagatgaatgattacccaaaacgcaaagaaaagtttaccaaa |
148 |
Q |
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| T |
65379 |
ccataagacctttaaggaaaggta-gcgatgaatgataacccaaaatgcaaagcaaagtttaccaaa |
65444 |
T |
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