View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19459_low_8 (Length: 440)
Name: NF19459_low_8
Description: NF19459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19459_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 13 - 417
Target Start/End: Complemental strand, 31222239 - 31221835
Alignment:
| Q |
13 |
aatatcgataatgtttctcctcggaactctacggtagagaatgtgggagtgggagtgggagtgtatgagaaagagagagtgtcttttgtgtctgtgtctg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
31222239 |
aatatcgataatgtttctcctcggaactctacggtagagaatgtgggagtgggagtgggagtgtgtgagaaagagagagtgtcttctgtgtctgtgtctg |
31222140 |
T |
|
| Q |
113 |
aatgttgtgtagaattgaatctggagagtgtggataatgttgatgatggtgtgaagagagattgtaggatttgccacctcagtatggatatgagaaacca |
212 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31222139 |
aatgttgtgtggaattggatctggagagtgtggataatgttgatgatggtgtgaagagagattgtaggatttgccacctcagtatggatatgagaaacca |
31222040 |
T |
|
| Q |
213 |
tgatgatgaccaacatgaatctgggattcctattgaactaggatgttcttgtaaagatgatttggctgctgcccataaacaatgtgctgaagcttggttt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31222039 |
tgatgatgaccaacatgaatctgggattcctattgaactaggatgttcctgtaaagatgatttggctgctgcccataaacaatgtgctgaagcttggttt |
31221940 |
T |
|
| Q |
313 |
aaggtcaagggtaacaagtaagttctgcattctcaaattaacattgtctcttaattaggtgtgtaatggatttgtgtgattagttatgacataataataa |
412 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31221939 |
aaggtcaagggtaacaagtaagttctgcattgtcaaattaacattgtttcttaattaggtgtgtaatggatttgtgtgattagttgtgacataataataa |
31221840 |
T |
|
| Q |
413 |
ctact |
417 |
Q |
| |
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|||| |
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|
| T |
31221839 |
ttact |
31221835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 103 - 337
Target Start/End: Complemental strand, 31246543 - 31246306
Alignment:
| Q |
103 |
tctgtgtctgaatgttgtgtagaattgaatctggagagtgtg---gataatgttgatgatggtgtgaagagagattgtaggatttgccacctcagtatgg |
199 |
Q |
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|||||||||||||||||||| || ||| |||||||||||||| | | ||||||||||| ||||||||||||||||||||||||||| ||||| |||| |
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| T |
31246543 |
tctgtgtctgaatgttgtgtggatttggatctggagagtgtggttgttgttgttgatgatgatgtgaagagagattgtaggatttgccaactcagcatgg |
31246444 |
T |
|
| Q |
200 |
atatgagaaaccatgatgatgaccaacatgaatctgggattcctattgaactaggatgttcttgtaaagatgatttggctgctgcccataaacaatgtgc |
299 |
Q |
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||||| |||||| ||||||||||||||||||||| ||| ||| ||||||||||||||||| ||||||||||| || || |||| ||||||| |||||| |
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| T |
31246443 |
atatggaaaaccaagatgatgaccaacatgaatcttggactcccattgaactaggatgttcctgtaaagatgacatgtctactgctcataaactatgtgc |
31246344 |
T |
|
| Q |
300 |
tgaagcttggtttaaggtcaagggtaacaagtaagttc |
337 |
Q |
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| T |
31246343 |
tgaagaatggttcaggatcaagggtaacaagtaagttc |
31246306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 335
Target Start/End: Complemental strand, 34933848 - 34933739
Alignment:
| Q |
226 |
catgaatctgggattcctattgaactaggatgttcttgtaaagatgatttggctgctgcccataaacaatgtgctgaagcttggtttaaggtcaagggta |
325 |
Q |
| |
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||||||||||| |||||||| || || || |||| ||| ||| |||||||||||||||| ||||| || |||||||| |||||||| ||| | || || | |
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| T |
34933848 |
catgaatctggaattcctatggagcttggttgtttttgcaaaaatgatttggctgctgctcataagcattgtgctgaggcttggttcaagattaaaggca |
34933749 |
T |
|
| Q |
326 |
acaagtaagt |
335 |
Q |
| |
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|||||||||| |
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|
| T |
34933748 |
acaagtaagt |
34933739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 34933892 - 34933844
Alignment:
| Q |
167 |
agagagattgtaggatttgccacctcagtatggatatgagaaaccatga |
215 |
Q |
| |
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|||| |||||||||||||| || || ||||||||||||| ||||||||| |
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|
| T |
34933892 |
agagggattgtaggatttgtcatcttagtatggatatgacaaaccatga |
34933844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 376
Target Start/End: Complemental strand, 18252432 - 18252387
Alignment:
| Q |
331 |
taagttctgcattctcaaattaacattgtctcttaattaggtgtgt |
376 |
Q |
| |
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||||||||||| | |||||| |||||||| |||||||||||||||| |
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| T |
18252432 |
taagttctgcaatgtcaaataaacattgtttcttaattaggtgtgt |
18252387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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