View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1945_high_1 (Length: 386)

Name: NF1945_high_1
Description: NF1945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1945_high_1
NF1945_high_1
[»] chr1 (4 HSPs)
chr1 (7-377)||(8933906-8934276)
chr1 (14-355)||(32044581-32044923)
chr1 (113-278)||(34049168-34049333)
chr1 (252-308)||(19623665-19623721)
[»] chr8 (4 HSPs)
chr8 (158-318)||(40743456-40743617)
chr8 (240-355)||(26280040-26280154)
chr8 (11-165)||(40743641-40743793)
chr8 (116-302)||(42263757-42263943)
[»] chr2 (2 HSPs)
chr2 (114-269)||(15087027-15087182)
chr2 (192-355)||(9965595-9965759)
[»] chr4 (4 HSPs)
chr4 (38-229)||(29446396-29446577)
chr4 (202-264)||(12212059-12212121)
chr4 (234-305)||(17433435-17433506)
chr4 (114-306)||(5334991-5335184)
[»] chr5 (5 HSPs)
chr5 (118-308)||(18291478-18291665)
chr5 (242-355)||(13002545-13002657)
chr5 (242-355)||(13077203-13077315)
chr5 (247-308)||(18476260-18476321)
chr5 (248-308)||(18220866-18220926)
[»] chr7 (2 HSPs)
chr7 (118-251)||(3625236-3625369)
chr7 (36-142)||(21602376-21602480)
[»] scaffold0113 (1 HSPs)
scaffold0113 (205-262)||(21391-21448)
[»] chr3 (1 HSPs)
chr3 (248-308)||(44119263-44119323)


Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 7 - 377
Target Start/End: Complemental strand, 8934276 - 8933906
Alignment:
Q  7 atcttatgtttccatgtctggaaaataacgcgaaatacattgtatcaatcaactttggatgctgagcaaaataacatattgattcgatggcatatgatcg 106  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8934276 atcttatgtttccatgtctggaaaataacgtgaaatacattgtatcaatcaactttggatgctgagcaaaataacatattgattcgatggcatatgatcg 8934177  T
Q  107 gacaatttgaatatgaatataaacttaaccctatgtctggcaattagtatttatacatgatttgaaccaactcccttaagtaacaagtcgttgtatcaca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8934176 gacaatttgaatatgaatataaacttaaccctatgtctggcaattagtatttatacatgatttgaaccaactcccttaagtaacaagtcgttgtatcaca 8934077  T
Q  207 cttgctaaatcaaaatatcgtttttggattgcacatcgacaaaagcattaaaaacatatttaaaccaaatatgatatagaatgcatagatcatatacaac 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8934076 cttgctaaatcaaaatatcgtttttggattgcacatcgacaaaagcattaaaaacatatttaaaccaaatatgatatagaatgcatagatcatatacaac 8933977  T
Q  307 cagttagattaagaataatacaataaaatcatagctacttacatctaatacttatcatgatgaagaataat 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8933976 cagttagattaagaataatacaataaaatcatagctacttacatctaatacttatcatgatgaagaataat 8933906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 14 - 355
Target Start/End: Complemental strand, 32044923 - 32044581
Alignment:
Q  14 gtttccatgtctggaaaataacgcgaaatacattgtatcaatcaactttggatgctgagcaaaataacatattgattcgatggcatatgatcggacaatt 113  Q
    |||||||||||| | ||| || || |||| ||| |||||||||||||   |||||| || ||||||||  |||||||| ||| ||||||| |  ||| ||    
T  32044923 gtttccatgtctagtaaacaatgcaaaatccatcgtatcaatcaactcctgatgctaagaaaaataactgattgattcaatgacatatgaccatacagtt 32044824  T
Q  114 tgaatatgaatataaacttaaccctatgtctggcaattagtatttatacatgatttgaacca-actcccttaagtaacaagtcgttgtatcacacttgct 212  Q
    |||||||||||||||| |||||||||||||   |||||||||| |||||||||||| ||| | |  ||| |||||||| ||||| ||| |  ||||||||    
T  32044823 tgaatatgaatataaatttaaccctatgtcgaacaattagtatctatacatgatttaaactagatccccctaagtaacgagtcgatgtctttcacttgct 32044724  T
Q  213 aaatcaaaatatcgtttttggattgcacatcgacaaaagcattaaaaacatatttaaaccaaatatgatatagaatgcatagatcatatacaaccagtta 312  Q
    |||| ||||||| ||||  ||||||||| ||   ||||  ||||| |||| || |||||||||  | |||| ||||||||| ||||||||||| ||| ||    
T  32044723 aaattaaaatattgtttgcggattgcacctcacaaaaataattaagaacaaatctaaaccaaaggttatattgaatgcataaatcatatacaatcagcta 32044624  T
Q  313 gattaagaataatacaataaaatcatagctacttacatctaat 355  Q
    |||||||| ||||||| ||||||| ||||||||||||||||||    
T  32044623 gattaagagtaatacattaaaatcctagctacttacatctaat 32044581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 113 - 278
Target Start/End: Complemental strand, 34049333 - 34049168
Alignment:
Q  113 ttgaatatgaatataaacttaaccctatgtctggcaattagtatttatacatgatttgaaccaactcccttaagtaacaagtcgttgtatcacacttgct 212  Q
    |||||||||||||||||  ||||||||||||| |  || ||||| |||| ||| ||| || ||| |||||||||||| |||||   || |||||||||||    
T  34049333 ttgaatatgaatataaatctaaccctatgtctagacatcagtatctatatatggtttaaaacaaatcccttaagtaagaagtcaacgtctcacacttgct 34049234  T
Q  213 aaatcaaaatatcgtttttggattgcacatcgacaaaagcattaaaaacatatttaaaccaaatat 278  Q
    |||||||||||| ||||   |||||||| |||||||||||||||   | |||||||||||||||||    
T  34049233 aaatcaaaatattgtttgcagattgcacgtcgacaaaagcattatgcaaatatttaaaccaaatat 34049168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 308
Target Start/End: Complemental strand, 19623721 - 19623665
Alignment:
Q  252 cattaaaaacatatttaaaccaaatatgatatagaatgcatagatcatatacaacca 308  Q
    |||||||||||||||||||| ||| || | || ||||| ||| ||||||||||||||    
T  19623721 cattaaaaacatatttaaactaaagattacattgaatggataaatcatatacaacca 19623665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 158 - 318
Target Start/End: Complemental strand, 40743617 - 40743456
Alignment:
Q  158 tatacatgatttgaaccaactccctt-aagtaacaagtcgttgtatcacacttgctaaatcaaaatatcgtttttggattgcacatcgacaaaagcatta 256  Q
    |||||||||||| |||||  |||||| ||| ||||||||  ||| || |||||||||||||||||||||||||  ||| ||| | |||||||||||||||    
T  40743617 tatacatgatttaaaccagatccctttaagcaacaagtcaatgtctcgcacttgctaaatcaaaatatcgtttacggagtgctcgtcgacaaaagcatta 40743518  T
Q  257 aaaacatatttaaaccaaatatgatatagaatgcatagatcatatacaaccagttagattaa 318  Q
    || | ||||||||| |||| || |||| |||||||||||||||||||||||| | |||||||    
T  40743517 aataaatatttaaatcaaagattatattgaatgcatagatcatatacaaccaatcagattaa 40743456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 355
Target Start/End: Original strand, 26280040 - 26280154
Alignment:
Q  240 catcgacaaaagcattaaaaacatatttaaaccaaatatgatatagaatgcatagatcatatacaaccagttagattaagaataatacaataaaatcata 339  Q
    ||||| |||||||||||| |||| ||||||||| || || |||| ||||||||| ||||||| |||  ||| ||||||||| |||||| ||| |||| ||    
T  26280040 catcggcaaaagcattaagaacagatttaaacctaagattatattgaatgcataaatcatatgcaattagtcagattaagagtaatac-atagaatccta 26280138  T
Q  340 gctacttacatctaat 355  Q
    | || |||||||||||    
T  26280139 gatatttacatctaat 26280154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 40743793 - 40743641
Alignment:
Q  11 tatgtttccatgtctggaaaataacgcgaaatacattgtatcaatcaactttggatgctgagcaaaataacatattgattcgatggcatatgatcggaca 110  Q
    ||||||||||||||||| |||  | || |||| ||||||| ||| ||||||  |||||| |||||| |||   |||||||| |||  |||||| | || |    
T  40743793 tatgtttccatgtctggcaaacgatgcaaaatccattgtaccaaccaacttctgatgctaagcaaa-taatcgattgattcaatgagatatgaccagata 40743695  T
Q  111 atttgaatatgaatataaacttaaccctatgtctggcaattagtatttatacatg 165  Q
     || |||||||||||||||| ||||| ||||||||||| ||||||| ||||||||    
T  40743694 gtt-gaatatgaatataaacctaaccatatgtctggcagttagtatatatacatg 40743641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 116 - 302
Target Start/End: Original strand, 42263757 - 42263943
Alignment:
Q  116 aatatgaatataaacttaaccctatgtctggcaattagtatttatacatgatttgaaccaactcccttaagtaacaagtcgttgtatcacacttgctaaa 215  Q
    |||||||||||| |  ||||| ||||| |||||||||||| | | || |||||| |||||  |   ||| |||| || ||| ||| |  |||||||||||    
T  42263757 aatatgaatatatatctaaccttatgtgtggcaattagtactcacacgtgatttaaaccatgtatattatgtaaaaattcgatgtcttgcacttgctaaa 42263856  T
Q  216 tcaaaatatcgtttttggattgcacatcgacaaaagcattaaaaacatatttaaaccaaatatgatatagaatgcatagatcatata 302  Q
    ||||| ||||||||  ||||||||||||  ||||| ||||| ||||  || ||||||||| || |||| ||||||| | ||||||||    
T  42263857 tcaaattatcgtttgcggattgcacatcagcaaaaccattacaaactgatataaaccaaagattatattgaatgcacacatcatata 42263943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 114 - 269
Target Start/End: Complemental strand, 15087182 - 15087027
Alignment:
Q  114 tgaatatgaatataaacttaaccctatgtctggcaattagtatttatacatgatttgaaccaactcccttaagtaacaagtcgttgtatcacacttgcta 213  Q
    ||||||||||||||||| ||||||||||| |  ||||||| ||||||||||||||| |||||  ||||||| ||||||||| | ||  || ||||| |||    
T  15087182 tgaatatgaatataaacctaaccctatgtttatcaattagcatttatacatgatttaaaccatatcccttaggtaacaagttgatggctcgcacttacta 15087083  T
Q  214 aatcaaaatatcgtttttggattgcacatcgacaaaagcattaaaaacatatttaa 269  Q
    | | |||||||| ||| ||||||| |||||  |||||||||||| |||| ||||||    
T  15087082 acttaaaatatcttttatggattgaacatcagcaaaagcattaagaacaaatttaa 15087027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 192 - 355
Target Start/End: Complemental strand, 9965759 - 9965595
Alignment:
Q  192 agtcgttgtatcacacttgctaaatcaaaatatcgtttttggattgcacatcgacaaaagcattaaaaacatatttaaaccaaat-atgatatagaatgc 290  Q
    ||||| ||| || |||||| ||| ||||||||||||||  ||||| ||  | | || || |||||| ||| |||||||||||||  || |||| ||||||    
T  9965759 agtcgatgtctctcacttgttaagtcaaaatatcgtttgcggattacatgttggcacaaacattaagaacgtatttaaaccaaaagattatattgaatgc 9965660  T
Q  291 atagatcatatacaaccagttagattaagaataatacaataaaatcatagctacttacatctaat 355  Q
    ||||| |||||||||| ||  | ||||||| ||||||  |||||||||  |||||||||| ||||    
T  9965659 atagaacatatacaactagccaaattaagagtaataccttaaaatcattcctacttacatttaat 9965595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 229
Target Start/End: Complemental strand, 29446577 - 29446396
Alignment:
Q  38 gaaatacattgtatcaatcaactttggatgctgagcaaaataacatattgattcgatggcatatgatcggacaatttgaatatgaatataaacttaaccc 137  Q
    ||||||||||||||||||||||||| |||||| ||||||||||   ||||||||  || ||||||||| || | || |||||| ||||||||| ||||      
T  29446577 gaaatacattgtatcaatcaacttttgatgctaagcaaaataatcgattgattcagtgacatatgatcagatagtt-gaatataaatataaacctaacaa 29446479  T
Q  138 tatgtctggcaattagtatttatacatgatttgaaccaactcccttaagtaacaagtcgttgtatcacacttgctaaatcaaaatatcgttt 229  Q
             |||||||||| |||||||| ||| ||| |  ||||||||||||||||||| ||| |||||| | |||||||||||||||||||    
T  29446478 ---------caattagtatctatacatggtttaaacaagatcccttaagtaacaagtcgatgtctcacacctactaaatcaaaatatcgttt 29446396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 202 - 264
Target Start/End: Complemental strand, 12212121 - 12212059
Alignment:
Q  202 tcacacttgctaaatcaaaatatcgtttttggattgcacatcgacaaaagcattaaaaacata 264  Q
    |||||||| ||||||||||||||| ||||||||||||| || || ||||||||||| ||||||    
T  12212121 tcacactttctaaatcaaaatatcatttttggattgcaaattgaaaaaagcattaagaacata 12212059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 17433435 - 17433506
Alignment:
Q  234 attgcacatcgacaaaagcattaaaaacatatttaaaccaaatatgatatagaatgcatagatcatatacaa 305  Q
    ||||||| ||| |||||||| ||| |||| |||||||||||| || |||| ||||||||| |||||||||||    
T  17433435 attgcacgtcggcaaaagcagtaagaacacatttaaaccaaagattatattgaatgcataaatcatatacaa 17433506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 306
Target Start/End: Original strand, 5334991 - 5335184
Alignment:
Q  114 tgaatatgaatataaacttaaccctatgtctggcaat-tagtatttatacatgatttgaaccaactcccttaagtaacaagtcgttgtatcacacttgct 212  Q
    ||||||| ||||||||| ||||||||| ||| ||||  ||| || ||||||| |||| || ||  ||||||||||| ||| |   ||| |||||||||||    
T  5334991 tgaatataaatataaacctaaccctatatctagcaaactagcatctatacattatttaaaacatttcccttaagtatcaatttaatgtctcacacttgct 5335090  T
Q  213 aaatcaaaatatcgtttttggattgcacatcgacaaaagcattaaaaacatatttaaaccaaatatgatatagaatgcatagatcatatacaac 306  Q
    |  ||||||| |||||| | |||||||  | | |||||||||| | |||| ||||| |  ||| |  |||| ||||||||| ||||||||||||    
T  5335091 acgtcaaaatttcgtttgttgattgcatgttggcaaaagcattcagaacagatttataataaagaaaatattgaatgcataaatcatatacaac 5335184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 118 - 308
Target Start/End: Original strand, 18291478 - 18291665
Alignment:
Q  118 tatgaatataaacttaaccctatgtctggcaattagtatttatacatgatttgaaccaactcccttaagtaacaagtcgttgtatcacacttgctaaatc 217  Q
    ||||||||||||||||||| ||||||| |||||||  || ||||| | |||| ||||   ||||| ||||||||||||| ||| |  || ||| ||||||    
T  18291478 tatgaatataaacttaaccttatgtctagcaattaacatctatacgttatttaaaccttgtccctcaagtaacaagtcgatgtcttgcatttgttaaatc 18291577  T
Q  218 aaaatatcgtttttggattgcacatcgacaaaagcattaaaaacatatttaaaccaaatatgatatagaatgcatagatcatatacaacca 308  Q
    ||||||||||||   |||| || |||||||||| |||||| ||||| ||   ||||||||| | || ||||||||| || ||||| |||||    
T  18291578 aaaatatcgtttgcagattacatatcgacaaaaacattaagaacatgtt---accaaatattacattgaatgcatatattatataaaacca 18291665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 242 - 355
Target Start/End: Original strand, 13002545 - 13002657
Alignment:
Q  242 tcgacaaaagcattaaaaacatatttaaaccaaatatgatatagaatgcatagatcatatacaaccagttagattaagaataatacaataaaatcatagc 341  Q
    |||||||||| ||||| || |||||||||||||| || |||| ||||||||| |||||||||||| ||  | ||||||| |||||| ||| |||| |||     
T  13002545 tcgacaaaagtattaagaatatatttaaaccaaagattatattgaatgcataaatcatatacaactagccaaattaagagtaatac-atagaatcttaga 13002643  T
Q  342 tacttacatctaat 355  Q
    || |||||||||||    
T  13002644 tatttacatctaat 13002657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 242 - 355
Target Start/End: Original strand, 13077203 - 13077315
Alignment:
Q  242 tcgacaaaagcattaaaaacatatttaaaccaaatatgatatagaatgcatagatcatatacaaccagttagattaagaataatacaataaaatcatagc 341  Q
    |||||||||| ||||| || |||||||||||||| || |||| ||||||||| |||||||||||| ||  | ||||||| |||||| ||| |||| |||     
T  13077203 tcgacaaaagtattaagaatatatttaaaccaaagattatattgaatgcataaatcatatacaactagccaaattaagagtaatac-atagaatcttaga 13077301  T
Q  342 tacttacatctaat 355  Q
    || |||||||||||    
T  13077302 tatttacatctaat 13077315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 308
Target Start/End: Original strand, 18476260 - 18476321
Alignment:
Q  247 aaaagcattaaaaacatatttaaaccaaatatgatatagaatgcatagatcatatacaacca 308  Q
    |||| |||||| ||||||||||||| ||| || |||| |||||| || ||||||||||||||    
T  18476260 aaaaacattaagaacatatttaaactaaagattatattgaatgcgtaaatcatatacaacca 18476321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 308
Target Start/End: Original strand, 18220866 - 18220926
Alignment:
Q  248 aaagcattaaaaacatatttaaaccaaatatgatatagaatgcatagatcatatacaacca 308  Q
    |||||||||| || | |||||||| ||| || |||| ||||||||| ||||||||||||||    
T  18220866 aaagcattaagaataaatttaaactaaaaattatattgaatgcataaatcatatacaacca 18220926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 118 - 251
Target Start/End: Complemental strand, 3625369 - 3625236
Alignment:
Q  118 tatgaatataaacttaaccctatgtctggcaattagtatttatacatgatttgaaccaactcccttaagtaacaagtcgttgtatcacacttgctaaatc 217  Q
    ||||||||||||||||||| || |||| |  |||| | || ||||||| ||| || ||  |||||||| ||| || ||| ||| || || ||||||||||    
T  3625369 tatgaatataaacttaaccataagtctaggcattaatgttcatacatggtttaaaacatgtcccttaaataataaatcgatgtctcgcatttgctaaatc 3625270  T
Q  218 aaaatatcgtttttggattgcacatcgacaaaag 251  Q
    |||||||||||| | |||||||| ||||||||||    
T  3625269 aaaatatcgtttgttgattgcacgtcgacaaaag 3625236  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 21602376 - 21602480
Alignment:
Q  36 gcgaaatacattgtatcaatcaactttggatgctgagcaaaataacatattgattcgatggcatatgatcggacaatttgaatatgaatataaacttaac 135  Q
    ||||||| ||||||||||||||||||  | ||||||||||||||   ||||||||| ||||||||||| |||| ||||  ||||||| |  |||| ||||    
T  21602376 gcgaaatccattgtatcaatcaacttccgttgctgagcaaaatagattattgattccatggcatatgaccggataatt--aatatgattgcaaacctaac 21602473  T
Q  136 cctatgt 142  Q
    |||||||    
T  21602474 cctatgt 21602480  T

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Target: scaffold0113 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 21391 - 21448
Alignment:
Q  205 cacttgctaaatcaaaatatcgtttttggattgcacatcgacaaaagcattaaaaaca 262  Q
    ||||| ||||||||||||||| ||||||||||||| ||| | ||||||||||| ||||    
T  21391 cactttctaaatcaaaatatcatttttggattgcatatcaaaaaaagcattaagaaca 21448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 44119323 - 44119263
Alignment:
Q  248 aaagcattaaaaacatatttaaaccaaatatgatatagaatgcatagatcatatacaacca 308  Q
    |||||||||||||||  ||||||| |||||| |||| ||||| ||| ||||||||||||||    
T  44119323 aaagcattaaaaacaagtttaaactaaatattatattgaatgtataaatcatatacaacca 44119263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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