View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1945_low_12 (Length: 251)

Name: NF1945_low_12
Description: NF1945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1945_low_12
NF1945_low_12
[»] chr1 (3 HSPs)
chr1 (156-238)||(7220802-7220884)
chr1 (186-238)||(33713311-33713364)
chr1 (198-238)||(13211787-13211827)
[»] chr7 (7 HSPs)
chr7 (163-238)||(5102022-5102097)
chr7 (176-243)||(8038174-8038242)
chr7 (168-238)||(20175173-20175244)
chr7 (186-238)||(2504812-2504865)
chr7 (198-238)||(2564472-2564512)
chr7 (198-238)||(3327047-3327087)
chr7 (198-238)||(26134230-26134270)
[»] chr6 (1 HSPs)
chr6 (154-238)||(10504213-10504298)
[»] chr8 (3 HSPs)
chr8 (156-238)||(24119143-24119226)
chr8 (186-238)||(17972805-17972858)
chr8 (186-238)||(45265009-45265062)
[»] chr4 (1 HSPs)
chr4 (179-238)||(12590308-12590366)
[»] chr2 (2 HSPs)
chr2 (155-214)||(25939751-25939810)
chr2 (198-238)||(12950511-12950551)
[»] chr5 (3 HSPs)
chr5 (186-238)||(20533496-20533549)
chr5 (198-238)||(17337279-17337319)
chr5 (183-234)||(17830733-17830785)
[»] chr3 (1 HSPs)
chr3 (198-238)||(21302520-21302560)


Alignment Details
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 7220884 - 7220802
Alignment:
Q  156 cttcatgatttaaattagtctggtaatttcattcttctttcaccttggtaatgtagacgagataaggttgcccgtttgtagaa 238  Q
    |||||||| |||||||||||   |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  7220884 cttcatgacttaaattagtccattaatttcattcttctttcaccttggtaaggtagacgagataagcttgcccgtttgtagaa 7220802  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 33713364 - 33713311
Alignment:
Q  186 attcttctttca-ccttggtaatgtagacgagataaggttgcccgtttgtagaa 238  Q
    |||||||||||| |||||||||  ||||| |||||||||||||| |||||||||    
T  33713364 attcttctttcatccttggtaagatagacaagataaggttgcccatttgtagaa 33713311  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 13211787 - 13211827
Alignment:
Q  198 ccttggtaatgtagacgagataaggttgcccgtttgtagaa 238  Q
    ||||||||| ||||| |||| ||||||||||||||||||||    
T  13211787 ccttggtaaggtagatgagacaaggttgcccgtttgtagaa 13211827  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 5102022 - 5102097
Alignment:
Q  163 atttaaattagtctggtaatttcattcttctttcaccttggtaatgtagacgagataaggttgcccgtttgtagaa 238  Q
    |||||||||||  | |||| |||||||||||||||||| ||||| ||||| |||||| |||||| |||||||||||    
T  5102022 atttaaattagcttagtaacttcattcttctttcacctcggtaaggtagatgagatagggttgctcgtttgtagaa 5102097  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 8038242 - 8038174
Alignment:
Q  176 tggtaatttcattcttctttcacctt-ggtaatgtagacgagataaggttgcccgtttgtagaattatc 243  Q
    |||||| || |||||||||||| ||| |||||||||||||||| | |||||||||||||||||| ||||    
T  8038242 tggtaactttattcttctttcatctttggtaatgtagacgagacagggttgcccgtttgtagaactatc 8038174  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 20175244 - 20175173
Alignment:
Q  168 aattagtctggtaatttcattcttctttca-ccttggtaatgtagacgagataaggttgcccgtttgtagaa 238  Q
    |||||| || |||| ||||||||||||||| ||||||||| |||||||||||  ||||| ||||||||||||    
T  20175244 aattagcctagtaacttcattcttctttcatccttggtaaggtagacgagatggggttgtccgtttgtagaa 20175173  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 2504865 - 2504812
Alignment:
Q  186 attcttctttca-ccttggtaatgtagacgagataaggttgcccgtttgtagaa 238  Q
    |||||||||||| ||||||||| |||||||||||| |||| ||| |||||||||    
T  2504865 attcttctttcatccttggtaaggtagacgagatatggtttcccatttgtagaa 2504812  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 2564512 - 2564472
Alignment:
Q  198 ccttggtaatgtagacgagataaggttgcccgtttgtagaa 238  Q
    ||||||||| |||||||||||| ||||||| ||||||||||    
T  2564512 ccttggtaaggtagacgagatagggttgcctgtttgtagaa 2564472  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 3327047 - 3327087
Alignment:
Q  198 ccttggtaatgtagacgagataaggttgcccgtttgtagaa 238  Q
    ||||||||| |||||||||||| ||||||| ||||||||||    
T  3327047 ccttggtaaggtagacgagatatggttgcctgtttgtagaa 3327087  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 26134230 - 26134270
Alignment:
Q  198 ccttggtaatgtagacgagataaggttgcccgtttgtagaa 238  Q
    ||||||||| |||||||||||| ||||| ||||||||||||    
T  26134230 ccttggtaaggtagacgagatatggttgtccgtttgtagaa 26134270  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 238
Target Start/End: Complemental strand, 10504298 - 10504213
Alignment:
Q  154 tacttcatgatttaaattagtctggtaatttcattcttctttcacc-ttggtaatgtagacgagataaggttgcccgtttgtagaa 238  Q
    |||||||||| |||||| ||||  |||| ||| ||||||||||| | ||||||| |||||||||||| |||||||| |||||||||    
T  10504298 tacttcatgacttaaatcagtcgagtaacttcgttcttctttcatcattggtaaggtagacgagatagggttgcccctttgtagaa 10504213  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 24119143 - 24119226
Alignment:
Q  156 cttcatgatttaaattagtctggtaatttcattcttctttca-ccttggtaatgtagacgagataaggttgcccgtttgtagaa 238  Q
    ||||||||||||||| || || |||| |||  | |||||||| || |||||| |||||||||||| ||||||||||||||||||    
T  24119143 cttcatgatttaaatcagcctagtaacttcgattttctttcatccctggtaaggtagacgagatagggttgcccgtttgtagaa 24119226  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 17972858 - 17972805
Alignment:
Q  186 attcttctttca-ccttggtaatgtagacgagataaggttgcccgtttgtagaa 238  Q
    ||||||||| || ||||||| | ||||||||||||||||||||||||| |||||    
T  17972858 attcttcttacatccttggtgaggtagacgagataaggttgcccgtttttagaa 17972805  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 45265009 - 45265062
Alignment:
Q  186 attcttctttca-ccttggtaatgtagacgagataaggttgcccgtttgtagaa 238  Q
    |||||||||||| ||||||||| |||||||||||| | ||| ||||||||||||    
T  45265009 attcttctttcatccttggtaaagtagacgagatatgattggccgtttgtagaa 45265062  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 12590308 - 12590366
Alignment:
Q  179 taatttcattcttctttcaccttggtaatgtagacgagataaggttgcccgtttgtagaa 238  Q
    |||||| |||||| |||| ||||  ||| |||||||||||||||||||||||||||||||    
T  12590308 taattttattctt-tttcccctttataaggtagacgagataaggttgcccgtttgtagaa 12590366  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 25939810 - 25939751
Alignment:
Q  155 acttcatgatttaaattagtctggtaatttcattcttctttcaccttggtaatgtagacg 214  Q
    ||||||||| |||||| ||||  |||||| |||||| ||||||||||||||| |||||||    
T  25939810 acttcatgacttaaataagtccagtaattccattctcctttcaccttggtaaggtagacg 25939751  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 12950511 - 12950551
Alignment:
Q  198 ccttggtaatgtagacgagataaggttgcccgtttgtagaa 238  Q
    ||||||||| |||||||||||| || |||||||||||||||    
T  12950511 ccttggtaaggtagacgagatagggctgcccgtttgtagaa 12950551  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 20533496 - 20533549
Alignment:
Q  186 attcttctttca-ccttggtaatgtagacgagataaggttgcccgtttgtagaa 238  Q
    ||||||||| || ||||||||||||||| |||||| |||||||| |||||||||    
T  20533496 attcttcttacatccttggtaatgtagatgagatatggttgcccatttgtagaa 20533549  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 17337279 - 17337319
Alignment:
Q  198 ccttggtaatgtagacgagataaggttgcccgtttgtagaa 238  Q
    |||| |||| |||||||||||||||||| ||||||||||||    
T  17337279 ccttcgtaaggtagacgagataaggttgtccgtttgtagaa 17337319  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 17830785 - 17830733
Alignment:
Q  183 ttcattcttctttca-ccttggtaatgtagacgagataaggttgcccgtttgt 234  Q
    ||||||||||||||| || |||| | |||||||||||| ||||||||||||||    
T  17830785 ttcattcttctttcatccgtggtgaggtagacgagatatggttgcccgtttgt 17830733  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 21302560 - 21302520
Alignment:
Q  198 ccttggtaatgtagacgagataaggttgcccgtttgtagaa 238  Q
    ||||||||| |||||||||||| |||||| |||||||||||    
T  21302560 ccttggtaaggtagacgagatagggttgctcgtttgtagaa 21302520  T

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