View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1945_low_4 (Length: 407)
Name: NF1945_low_4
Description: NF1945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1945_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 12 - 358
Target Start/End: Original strand, 29047134 - 29047480
Alignment:
| Q |
12 |
acagatccaagcaagttatcaaaccttaatcttgaagcctgcataaaccactataacaaaaccaatggctccaaagttccccttggtaaggttaggctca |
111 |
Q |
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| T |
29047134 |
acagatccaagcaagttatcaaaccttaatcttgaagcctgcataaaccactataacaaaaccaatggctccaaaattccccttggcaaggttaagctca |
29047233 |
T |
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| Q |
112 |
ctggaacctcatttgttccacattctgatgctgttgtattacactatcctcttgaaaagaaaggcattttttcgcgcacgaaaggtgaacttggtttgaa |
211 |
Q |
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| T |
29047234 |
ctggaacctcatttgttccacattctgatgctgttgtattacactatcctcttgaaaagaaaggcattttttcgcgcacgaaaggtgaacttggtttgaa |
29047333 |
T |
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| Q |
212 |
ggtattcattacaaataatccttctttaagagcctcaaaccctcttcctgctatgcaagaaccctacgtcaacaatggattcatgaataccgatcaaaac |
311 |
Q |
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| T |
29047334 |
ggtattcattacaaataatccttctttaagagcctcaaaccctcttcctgctatgcaagaacccttcgtcaacaatggattcatgaataccgatcaaaac |
29047433 |
T |
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| Q |
312 |
cttgcacaagatcaaataccggtaccggcatcatttacaaatcaaat |
358 |
Q |
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| T |
29047434 |
cttgcacaagatcaaataccggtaccggcatcatttacaaatcaaat |
29047480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 217
Target Start/End: Complemental strand, 11705242 - 11705118
Alignment:
| Q |
93 |
cttggtaaggttaggctcactggaacctcatttgttccacattctgatgctgttgtattacactatcctcttgaaaagaaaggcattttttcgcgcacga |
192 |
Q |
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| T |
11705242 |
cttggtaaggtccgtctcacggaaacctcatttgtgccactttctgatgctgttgtattgcactaccctctggaaaagaaaatcaccttttctcgcgtaa |
11705143 |
T |
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| Q |
193 |
aaggtgaacttggtttgaaggtatt |
217 |
Q |
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|||| || ||||||||||||||||| |
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| T |
11705142 |
aaggagagcttggtttgaaggtatt |
11705118 |
T |
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