View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1945_low_6 (Length: 363)
Name: NF1945_low_6
Description: NF1945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1945_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 75 - 330
Target Start/End: Original strand, 449150 - 449409
Alignment:
| Q |
75 |
gttgtttccatcacccttcgtccttggttgggtgatgaaacaacaacaattcattcaaactcaactaaaacaaatttttattttccatatgccttccatg |
174 |
Q |
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| T |
449150 |
gttgtttctatcacccttcgtccttgcttgggtgatgaaacaacaataattcattcaaactcaactaaaacaaatatttattttccatatgcctaccatg |
449249 |
T |
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| Q |
175 |
aac----tttcatatgaacaggtgcaaaatttcatccatggaggtagattggtctcaacttccttcagagcttctgcaactaatttcacaaaaactcagc |
270 |
Q |
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||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
449250 |
aacgtactttcatatgaacaggtgcaaaattccatccatggaggtagattggtctcaacttccttcagagcttctgcaactaatttcacaaaaactcagc |
449349 |
T |
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| Q |
271 |
aacattgagctctacctcattcgctttcgttctgtttgttccacatggcgctcttcatct |
330 |
Q |
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| T |
449350 |
aacattgagctctacctcattcgctttcgttctgtttgttccacatggcgctcttcatct |
449409 |
T |
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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 326
Target Start/End: Complemental strand, 9687636 - 9687513
Alignment:
| Q |
203 |
catccatggaggtagattggtctcaacttccttcagagcttctgcaactaatttcacaaaaactcagcaacattgagctctacctcattcgctttcgttc |
302 |
Q |
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| T |
9687636 |
catccatggaagcagattggtctcagcttccgagagaacttctgcaactaatatcacaaaaactcgacaacagtgaactctatcttcttcgctttcgttc |
9687537 |
T |
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| Q |
303 |
tgtttgttccacatggcgctcttc |
326 |
Q |
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| T |
9687536 |
cgtctgttccacttggtgctcttc |
9687513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 326
Target Start/End: Complemental strand, 9330779 - 9330672
Alignment:
| Q |
216 |
agattggtctcaacttccttcagagcttctgcaactaatttcacaaaaactcagcaacattgagctctacctcattcgctttcgttctgtttgttccaca |
315 |
Q |
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|||||||||||| ||||||||||| ||||| |||||||||||||||||||| | ||| || || | |||| |||||||||||||||| ||||| ||| |
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| T |
9330779 |
agattggtctcaccttccttcagaacttcttcaactaatttcacaaaaact---cgacactgtactttgcctccttcgctttcgttctgtatgttcaaca |
9330683 |
T |
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| Q |
316 |
tggcgctcttc |
326 |
Q |
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||||| ||||| |
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| T |
9330682 |
tggcgttcttc |
9330672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 266
Target Start/End: Complemental strand, 9337466 - 9337403
Alignment:
| Q |
203 |
catccatggaggtagattggtctcaacttccttcagagcttctgcaactaatttcacaaaaact |
266 |
Q |
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||||||||| | |||||||||||| ||||||||||| ||||| |||||||||||||||||||| |
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| T |
9337466 |
catccatggctgcagattggtctcaccttccttcagaacttcttcaactaatttcacaaaaact |
9337403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 319
Target Start/End: Complemental strand, 9710535 - 9710458
Alignment:
| Q |
242 |
ttctgcaactaatttcacaaaaactcagcaacattgagctctacctcattcgctttcgttctgtttgttccacatggc |
319 |
Q |
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|||||||||| || || || ||||| | ||||| |||| |||||||||||||||| ||||| || |||||||| |||| |
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| T |
9710535 |
ttctgcaactcatatcccacaaactgaacaacactgagatctacctcattcgcttgcgttccgtatgttccacttggc |
9710458 |
T |
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