View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1945_low_8 (Length: 317)

Name: NF1945_low_8
Description: NF1945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1945_low_8
NF1945_low_8
[»] chr3 (5 HSPs)
chr3 (96-317)||(46995359-46995580)
chr3 (96-317)||(46974556-46974777)
chr3 (96-317)||(46980545-46980766)
chr3 (96-317)||(46997619-46997840)
chr3 (96-311)||(47001282-47001498)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 96 - 317
Target Start/End: Original strand, 46995359 - 46995580
Alignment:
Q  96 cccaaaatattccttaggaagagacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacga 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46995359 cccaaaatattccttaggaagagacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacga 46995458  T
Q  196 gttatagatctccaaactagtgcagataaagattgaaacgaagagattttcgttgtctcgcactctttgtttgcctttgctttaagttttgctatagact 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  46995459 gttatagatctccaaactagtgcagataaagattgaaacgaagagattttcgttgtctcgcactctttgtttgcctttgctttgagttttgctataaact 46995558  T
Q  296 ctgctgaaaaatggaagattct 317  Q
    ||||||||||||||||||||||    
T  46995559 ctgctgaaaaatggaagattct 46995580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 96 - 317
Target Start/End: Original strand, 46974556 - 46974777
Alignment:
Q  96 cccaaaatattccttaggaagagacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacga 195  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||| |||||| ||||||||| ||||||||| | || |||||| ||||  |||||    
T  46974556 cccaaaatattccttcggaagaggtggttccattctcgttcggttgtttgtagccagtttgcaagttgttctctgaccgtgttgtagttgacgtgcacga 46974655  T
Q  196 gttatagatctccaaactagtgcagataaagattgaaacgaagagattttcgttgtctcgcactctttgtttgcctttgctttaagttttgctatagact 295  Q
    ||||||||||||||||||| ||| |||||||||||||||||||| |||||  |||| |   ||||||  |||||||||||||| |||||   ||||||||    
T  46974656 gttatagatctccaaactaatgctgataaagattgaaacgaagaaatttttcttgtattagactcttcatttgcctttgctttcagtttcattatagact 46974755  T
Q  296 ctgctgaaaaatggaagattct 317  Q
    | ||||||||||||||||||||    
T  46974756 cagctgaaaaatggaagattct 46974777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 96 - 317
Target Start/End: Original strand, 46980545 - 46980766
Alignment:
Q  96 cccaaaatattccttaggaagagacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacga 195  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||||| |||||| ||||||||| ||||||||| | || |||||| ||||  || ||    
T  46980545 cccaaaatattccttaggaagaggtggttccattcttgttcggttgtttgtagccattttgcaagttgttctctgaccgtgttgtagttgacgtgcatga 46980644  T
Q  196 gttatagatctccaaactagtgcagataaagattgaaacgaagagattttcgttgtctcgcactctttgtttgcctttgctttaagttttgctatagact 295  Q
    ||||||||||||||||||| ||| |||||||||||||||||||| |||||  |||| |   |||||   ||||||||||||||||||||||||||||| |    
T  46980645 gttatagatctccaaactaatgctgataaagattgaaacgaagaaattttgtttgtattagactctgcatttgcctttgctttaagttttgctatagatt 46980744  T
Q  296 ctgctgaaaaatggaagattct 317  Q
    |  |||||||||||||||||||    
T  46980745 ccactgaaaaatggaagattct 46980766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 96 - 317
Target Start/End: Original strand, 46997619 - 46997840
Alignment:
Q  96 cccaaaatattccttaggaagagacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacga 195  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||  |||||||||||||| ||||  ||| | || ||||   ||||  ||||     
T  46997619 cccaaaatattccttaggaagaggtggttccattctcgttcggttgtttacggccaatttgcaagttgttcgttgaccttgttgtaactgacgtgcacgc 46997718  T
Q  196 gttatagatctccaaactagtgcagataaagattgaaacgaagagattttcgttgtctcgcactctttgtttgcctttgctttaagttttgctatagact 295  Q
    |||| |||||||||||||||||| ||||| |||||||| |||||||||||  |||| ||  |||||||||| || |||||||||||||| || |||||||    
T  46997719 gttagagatctccaaactagtgctgataaggattgaaaagaagagattttgtttgtatcagactctttgttagcttttgctttaagtttcgcaatagact 46997818  T
Q  296 ctgctgaaaaatggaagattct 317  Q
    ||||||||||||| || |||||    
T  46997819 ctgctgaaaaatgaaatattct 46997840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 96 - 311
Target Start/End: Original strand, 47001282 - 47001498
Alignment:
Q  96 cccaaaatattccttaggaagagacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacga 195  Q
    |||||||||||| || ||||||| |||||| ||||| ||||||||||||| || ||| || ||||| ||||| ||| |    ||| || |||   |||||    
T  47001282 cccaaaatattcatttggaagaggcggttctattctagttcggttgtttaaagacaacttacaagttgttctttgaccgcattgttgttgacatgcacga 47001381  T
Q  196 gttatagatctccaaactagtgcagataaagattgaaacgaagagattttcgttgtctcgcactctttgtttgcctttg-ctttaagttttgctatagac 294  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||  |||| ||  |||||||||| || |||| |||||||||| |||||||||    
T  47001382 gttatagatctccaaactagtgctgataaagattgaaacgaagagattttgtttgtatcaaactctttgttagcttttgcctttaagtttcgctatagac 47001481  T
Q  295 tctgctgaaaaatggaa 311  Q
    |||||||||||||||||    
T  47001482 tctgctgaaaaatggaa 47001498  T

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