View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19460_low_1 (Length: 423)
Name: NF19460_low_1
Description: NF19460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19460_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 222 - 413
Target Start/End: Original strand, 30274128 - 30274319
Alignment:
| Q |
222 |
tcggttctgctatgtttccagctgcatcagaatacaattttctgatatttgcttctctccagtcatgtaacagctgccttgctcgaactgtaatggcctg |
321 |
Q |
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| T |
30274128 |
tcggttctgccatgtttccagctgcatcagaatacaattttctgatatttgcttctctccagtcatgtaacagctgccttgctcgaactgtaatggcctg |
30274227 |
T |
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| Q |
322 |
gcacgtctctgaaatgttctgccaaactcttagattctgactcttccataagcaccgtaaattcatagcaaactattcggctttctcctttg |
413 |
Q |
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| T |
30274228 |
gcacatctctgaaatgttctgccaaactcttagattctgactcttccataaccaccgtaaattcatagcaaactattcggctttctcctttg |
30274319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 30273953 - 30274126
Alignment:
| Q |
17 |
acatatgggattagtccacaacatctttgccttttaaaatttccagcagcatcccgtttgcatagctcaacatcaacacggtttaaagcttccgaaaaca |
116 |
Q |
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| T |
30273953 |
acatatgggattagtccacaacatctttgccttttaaaatttccagcagcatcccgtttgcatagctcaacaccaacacggtttaaagcttccgaaaacg |
30274052 |
T |
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| Q |
117 |
ccccatctatattacattttaacctcccttgctgcggttttacccacttaacttgtgatggcatcaaactttgc |
190 |
Q |
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| T |
30274053 |
ccccatctatattacattttaacctcccttgctgcggttttgcccacttaacttgtgatggcatcaaactttgc |
30274126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 38356501 - 38356387
Alignment:
| Q |
16 |
cacatatgggattagtccacaacatctttgccttt-taaaatttccagcagcatcccgtttgcatagctcaacatcaacacggtttaaagcttccgaaaa |
114 |
Q |
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| T |
38356501 |
cacatatgggattagtccacaatgtctttgccttaatgaagtttccagcagcattccggatgcataacccaacaccaacacgatttaaaacttccgaaaa |
38356402 |
T |
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| Q |
115 |
caccccatctatatt |
129 |
Q |
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| T |
38356401 |
cgccgcatctatatt |
38356387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 411
Target Start/End: Original strand, 27040291 - 27040436
Alignment:
| Q |
266 |
atatttgcttctctccagtcatgtaacagctgccttgctcgaactgtaatggcctggcacgtctctgaaatgttctgccaaactcttagattctgactct |
365 |
Q |
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| T |
27040291 |
atatttgcttctctccactcaactaacatctgttgtgctcgagcagaaatagcctggcatgtttctgaaatattctgccatattcgaagattccgactct |
27040390 |
T |
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| Q |
366 |
tccataagcaccgtaaattcatagcaaactattcggctttctcctt |
411 |
Q |
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| T |
27040391 |
tccataaactccataaattcatcgcaaactgttcgaatttctcctt |
27040436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 27040041 - 27040182
Alignment:
| Q |
17 |
acatatgggattagtccacaacatctttgcctt-ttaaaatttccagcagcatcccgtttgcatagctcaacatcaacacggtttaaagcttccgaaaac |
115 |
Q |
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|||||||||||||| ||||| |||||||||||| | ||||| ||||||||||||||| | || | | ||| | ||||| | |||||| ||||||||||| |
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| T |
27040041 |
acatatgggattagaccacatcatctttgccttcctgaaattaccagcagcatcccgtatacacaacccaaaaccaacatgatttaaatcttccgaaaac |
27040140 |
T |
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| Q |
116 |
accccatctatattacattttaacctcccttgctgcggtttt |
157 |
Q |
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|| | || || || ||||||| | | ||||||||||||||| |
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| T |
27040141 |
gccgcgtcgatgttgcattttagcttaccttgctgcggtttt |
27040182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 14489583 - 14489681
Alignment:
| Q |
17 |
acatatgggattagtccacaacatctttgccttttaaaatttccagcagcatcccgtttgcatagctcaacatcaacacggtttaaagcttccgaaaac |
115 |
Q |
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|||||||||||||| ||||| |||||||||||| ||||| ||||||||||||||| | || ||| || | ||||||| ||| || ||||||||||| |
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| T |
14489583 |
acatatgggattagaccacatcatctttgccttcctaaattaccagcagcatcccgtatacacagcctaaaaccaacacgatttgaatcttccgaaaac |
14489681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 12200602 - 12200659
Alignment:
| Q |
17 |
acatatgggattagtccacaacatctttgcctt-ttaaaatttccagcagcatcccgt |
73 |
Q |
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| T |
12200602 |
acatatgggattagaccacatcatctttgccttcctgaaattaccagcagcatcccgt |
12200659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 409
Target Start/End: Original strand, 14150894 - 14150974
Alignment:
| Q |
329 |
tctgaaatgttctgccaaactcttagattctgactcttccataagcaccgtaaattcatagcaaactattcggctttctcc |
409 |
Q |
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|||||||| |||| ||| |||| || ||| ||||||||||||| | || ||||||||||||||||| || ||||||||| |
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| T |
14150894 |
tctgaaatattctcccatactcgtaagttccgactcttccataaactccataaattcatagcaaactgctcagctttctcc |
14150974 |
T |
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