View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19460_low_2 (Length: 423)
Name: NF19460_low_2
Description: NF19460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19460_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 56372013 - 56371626
Alignment:
| Q |
18 |
attttttagtttgaatctttttctttccaaaattcaaactataata----tacttggaggtgttttctttatttgtgaagcactcaacaatgtatatgta |
113 |
Q |
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| T |
56372013 |
attttttagtttgaatctttttctttccaaaattcaaactagcatatacttacttggaggtgtttcctttatttgtgaagcactcaacaatatatatgta |
56371914 |
T |
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| Q |
114 |
tgtctctctctgcaacacatggaaatgtaatgttggcaatggaatgcatcattctaattctatgtggacaac-aacttttgtctttccgtgtaataagag |
212 |
Q |
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| T |
56371913 |
tgtctctctctgcaacacatgcaaatgtaatgttggcaatggcatgcatcattctaattcta--tggacaacaaacttttgtctttccgtgtaataagag |
56371816 |
T |
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| Q |
213 |
gaaaggatcattttacactctttcttactttgaaannnnnnnnnnnnnnnnnnnnnntgcatgtgcaatgttgcaggaattaatggggtaattggtttgg |
312 |
Q |
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| T |
56371815 |
gaaaggatcattttacactctttcttactttgaaa---------agcagcagcagcatgcatgtgcaatgttgcaggaattaat-gggtaattggtttgg |
56371726 |
T |
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| Q |
313 |
ttccttaagcttcaaatgttgtaatgtttctttctttccttccaatcttagatagaggatcatcccaaaaactgtcagattggactatcatttcatctca |
412 |
Q |
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| T |
56371725 |
ttccttaagcttcaaatgttgtaatgtttctttctttccttccaatcttagatagaggatcatccc-aaaactgtcagattggactatcatttcatttca |
56371627 |
T |
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