View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19460_low_3 (Length: 263)
Name: NF19460_low_3
Description: NF19460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19460_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 9660237 - 9659995
Alignment:
| Q |
18 |
ctattcacggagggctctgcaattttagttcaatattttttggttgctattggtattctaattctaagtgccatttcaatggccgagtgtagtaaatttt |
117 |
Q |
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| T |
9660237 |
ctattcatggagtgctctgcaattttagttcaatattttttggttgctattggtattctaattctaagtgccatttcgatggccgagtgtagtaaatttt |
9660138 |
T |
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| Q |
118 |
actgttattaagtgatgtggactaatataatgggtttttgtttttaacactcactttggaattttcatataaaaaattcttcta----------tgtttc |
207 |
Q |
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| T |
9660137 |
actgttattaagtggtgtggactaatataatgggtttttgtttttaacactcactttggaattttcatataaaaaatgcttttatatttggtattgtttc |
9660038 |
T |
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| Q |
208 |
cagattttgtaaccatttcaatgagttaggagccactttgttc |
250 |
Q |
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| T |
9660037 |
cagattttgtaaccatttcaatgagttaggagccactttgttc |
9659995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 56
Target Start/End: Complemental strand, 10215904 - 10215876
Alignment:
| Q |
28 |
agggctctgcaattttagttcaatatttt |
56 |
Q |
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| T |
10215904 |
agggctctgcaattttagttcaatatttt |
10215876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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