View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19460_low_5 (Length: 239)
Name: NF19460_low_5
Description: NF19460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19460_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 43007885 - 43008109
Alignment:
| Q |
1 |
tgattaaacaaaaaacacatttgaagatcaattcattaaag-aaaaatacattcagagatatttttgtaactttaatatttttaaatattacaataacaa |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43007885 |
tgattaaacaaaaaacacatttgaagatcaattcattaaaggaaaaatacattcagagatatttttgtaactttaatacttttaaatattacaataacaa |
43007984 |
T |
|
| Q |
100 |
cgtttgacacattgaaataccgaatacttgtttctcaatgtattaatgaataccataacactaaaactatctccttacttcaattattttttgtcgattg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43007985 |
cgtttgacacattgaaataccgaatacttgtttctcaatgtattaatgaataccataacactaaaactatctccttacttcaattattttttgtcgattg |
43008084 |
T |
|
| Q |
200 |
gattggttttttatacttaattatt |
224 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
43008085 |
gattggttttttatacttaattatt |
43008109 |
T |
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