View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19461_high_4 (Length: 263)
Name: NF19461_high_4
Description: NF19461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19461_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 6127550 - 6127784
Alignment:
| Q |
9 |
gaagaatatacatgagagacttggtcgattagaaaaccaacaaaattatagcgatgacgagtaatggatgagaaggagagaactagaagaaagac----- |
103 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
6127550 |
gaagaaaatacatgagaaacttggtcgattagaaaaccaacaaaattatagcgatgaggagtaatggatgagaaggagagaa------gaaagacctagg |
6127643 |
T |
|
| Q |
104 |
gggaacaaattgagtggtttaaaaataaaagtaccaccttttgacggaagaaataatttagagacttattcagaatgggaaacaaaaattgaacgaattt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
6127644 |
gggaacaaattgagtggtttaaaaataaaagtaccaccttttgacggaagaaataattcagagacttatttagaatgggaaacaaaaatggaacgaattt |
6127743 |
T |
|
| Q |
204 |
ttgttgtaacacct-tattaacgttaaaaagatgcaggttg |
243 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6127744 |
ttgttgtaacacctgtattaacgttaaaaagatgcaggttg |
6127784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University