View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19461_low_1 (Length: 539)
Name: NF19461_low_1
Description: NF19461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19461_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 15 - 525
Target Start/End: Complemental strand, 40752009 - 40751499
Alignment:
| Q |
15 |
ggcatgttataatggctagaaaacaaagggaacaatccaagttatgtggcaagagaagttttcaagaagttttttctaactcctctatacttaatttccc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40752009 |
ggcatgttataatggctagaaaacaaagggaacaatccaagttatgtggcaagagaagttttcaagaagttttttctaactcctctatacttaatttccc |
40751910 |
T |
|
| Q |
115 |
ttacaccacaagaattgattatgagaatggaagattctatgataatacaccttctagttctcttgcctcttggaattttgcttctatgtcaacaaaacca |
214 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40751909 |
ttacaccacaagaattggatatgagaatggaagattctatgataatacaccttctagttctcttgcctcttggaattttgcttctatgtcaacaaaacca |
40751810 |
T |
|
| Q |
215 |
aacactactactgcttctactattttaccggataattgcatcacaagaaaaggatctaatgtttataaaggctcggatagatcatttctctacagaatct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40751809 |
aacactactactgcttctactattttaccggataattgcatcacaagaaaaggatctaatgtttataaaggctcggatagatcatttctctacagaatct |
40751710 |
T |
|
| Q |
315 |
gtccgaatcaagcattctcatcacttccaaattacaagagggttgctccaaatgcttttggttttttaaattcttctgatgatggaaggataaagaagga |
414 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40751709 |
gtccaaatcaagcattctcatcacttccaaattacaagagggttgctccaaatgcttttggttttttaaattcttctgatgatggaaggataaagaagga |
40751610 |
T |
|
| Q |
415 |
tttggtgagtagtttatgtgataactcatcaacattaatcacaaacttaaagtcttccatggagaaagagcaagatcgcgatgaggtcgaaattgagcat |
514 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40751609 |
tttggtgagtagtttatgtgataactcatctacattaatcacaaacttaaagtcttccatggagaaagagcaagatcgcgatgaggtcgaaattgagcat |
40751510 |
T |
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| Q |
515 |
cacaaagaagt |
525 |
Q |
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| T |
40751509 |
cacaaagaagt |
40751499 |
T |
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