View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19461_low_3 (Length: 278)
Name: NF19461_low_3
Description: NF19461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19461_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 30380594 - 30380861
Alignment:
| Q |
1 |
ccatatagaaagcactgatgtttgcaattttggattgggaagagcaccagaaagaagcaccattagttcaaatgtccatgattctaaactgtaacattaa |
100 |
Q |
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| T |
30380594 |
ccatatagaaagcactgatgtttgcaattttggattgggaagagcaccagaaagaagcaccattagttcaaatgtccatgattctaaactgtaacattaa |
30380693 |
T |
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| Q |
101 |
aaaacaattagaaattgtaaaggatattgtctgaagttttagtacattagaattctcttcaatgnnnnnnntttaataatcttatttatagttactaaac |
200 |
Q |
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| T |
30380694 |
aaaacaattagaaattgtaaaggatattgtctgaagtttaagtacattagaattctcttcaatgaaaaaaatttaataatcttatttatagttactaaac |
30380793 |
T |
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| Q |
201 |
----taaaaataataatgtgcatctttaaaggactaagataagattactctactactaagatttaagt |
264 |
Q |
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| T |
30380794 |
caaaaaaaaataataatgtgcatctttaaaggactaagataagattactctactactaagatttaagt |
30380861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 30431943 - 30432036
Alignment:
| Q |
1 |
ccatatagaaagcactgatgtttgcaattttggattgggaagagcaccagaaagaagcaccattagttcaaatgtccatgattctaaactgtaa |
94 |
Q |
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| T |
30431943 |
ccatatagaaaggactgaagtttgcaattttgggttgggaagagcaccagaaaggagcaccattatttcaaatgtccatgattctaagctgtaa |
30432036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 30415306 - 30415399
Alignment:
| Q |
1 |
ccatatagaaagcactgatgtttgcaattttggattgggaagagcaccagaaagaagcaccattagttcaaatgtccatgattctaaactgtaa |
94 |
Q |
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| T |
30415306 |
ccatatagaaaggactgaagtttgcaactgtggattgggaagagcaccagacaggagcaccattatttgaaatgtccatgattctaagctgtaa |
30415399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 30372386 - 30372463
Alignment:
| Q |
13 |
cactgatgtttgcaattttggattgggaagagcaccagaaagaagcaccattagttcaaatgtccatgattctaaact |
90 |
Q |
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| T |
30372386 |
cactgatgtttgcaatattggattgggaagagcaccagataggaggagcattaattgaaatttccatgattctaaact |
30372463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 30476729 - 30476822
Alignment:
| Q |
1 |
ccatatagaaagcactgatgtttgcaattttggattgggaagagcaccagaaagaagcaccattagttcaaatgtccatgattctaaactgtaa |
94 |
Q |
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| T |
30476729 |
ccatatagcaagcactgaagtttgcaattttggattaggaagagtaccagagaggagaaccattatttcatacatccaagattctaagctgtaa |
30476822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 30470360 - 30470446
Alignment:
| Q |
1 |
ccatatagaaagcactgatgtttgcaattttggattgggaagagcaccagaaagaagcaccattagttcaaatgtccatgattctaa |
87 |
Q |
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| T |
30470360 |
ccataaagaaagtaccgatgtttgcaattttggattaggaagagtaccggataggagcaccattatttcatacatccatgattctaa |
30470446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 24708106 - 24708037
Alignment:
| Q |
5 |
atagaaagcactgatgtttgcaattttggattgggaagagcaccagaaagaagcaccattagttcaaatg |
74 |
Q |
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| T |
24708106 |
atagaaagcactgatgtttccaactttggatttggaagaagaccggaaagaagaaccatcaattcaaatg |
24708037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 30484227 - 30484296
Alignment:
| Q |
5 |
atagaaagcactgatgtttgcaattttggattgggaagagcaccagaaagaagcaccattagttcaaatg |
74 |
Q |
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| T |
30484227 |
atagaaagcacagatgtttccaactttggatttggaagaacaccagaaaggagaaccatcaattcaaatg |
30484296 |
T |
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