View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19461_low_7 (Length: 215)

Name: NF19461_low_7
Description: NF19461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19461_low_7
NF19461_low_7
[»] chr6 (13 HSPs)
chr6 (18-200)||(6585286-6585468)
chr6 (65-195)||(6603256-6603386)
chr6 (67-198)||(6402777-6402908)
chr6 (67-198)||(7119074-7119205)
chr6 (67-198)||(7131552-7131683)
chr6 (65-195)||(6432076-6432206)
chr6 (69-200)||(19632358-19632489)
chr6 (71-200)||(10579785-10579915)
chr6 (57-200)||(6415873-6416016)
chr6 (67-185)||(6423134-6423252)
chr6 (69-186)||(7994245-7994362)
chr6 (122-190)||(6586169-6586237)
chr6 (156-200)||(14802342-14802386)
[»] chr3 (4 HSPs)
chr3 (71-196)||(51113834-51113959)
chr3 (62-200)||(51764489-51764627)
chr3 (57-200)||(13470781-13470924)
chr3 (67-189)||(514788-514910)
[»] chr2 (2 HSPs)
chr2 (71-196)||(45245138-45245263)
chr2 (71-195)||(1037718-1037842)
[»] chr4 (11 HSPs)
chr4 (71-190)||(546834-546953)
chr4 (69-182)||(8184097-8184210)
chr4 (94-190)||(1548483-1548579)
chr4 (67-200)||(1513456-1513586)
chr4 (72-176)||(370842-370946)
chr4 (71-175)||(53761844-53761947)
chr4 (71-195)||(55908782-55908906)
chr4 (140-190)||(558488-558538)
chr4 (163-195)||(566202-566234)
chr4 (84-200)||(640849-640965)
chr4 (67-119)||(21834436-21834488)
[»] chr1 (2 HSPs)
chr1 (57-200)||(19468548-19468691)
chr1 (84-195)||(7554422-7554533)
[»] chr7 (3 HSPs)
chr7 (67-200)||(15092200-15092333)
chr7 (68-185)||(10170145-10170262)
chr7 (68-185)||(10177670-10177787)
[»] chr5 (1 HSPs)
chr5 (52-200)||(20478131-20478279)
[»] scaffold0807 (1 HSPs)
scaffold0807 (139-190)||(1526-1577)
[»] chr8 (2 HSPs)
chr8 (140-190)||(32151291-32151341)
chr8 (157-200)||(18315322-18315365)
[»] scaffold0041 (1 HSPs)
scaffold0041 (157-200)||(39191-39234)


Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 6585468 - 6585286
Alignment:
Q  18 ttaagtacaagacatactcaatttacatatacagaaggcatccatgttttctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6585468 ttaagtacaagacatactcaatttacatatacagaaggcatccatgttttctcagttgtgtgcaaatttctaccacatgtttcagtcccttctctgtgac 6585369  T
Q  118 attttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagatcacatagagtgtttcatcaccaacctttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6585368 attttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagatcacatagagtgtttcatcatcaacctttg 6585286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 65 - 195
Target Start/End: Complemental strand, 6603386 - 6603256
Alignment:
Q  65 tttctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactct 164  Q
    |||||||||||| ||||  |||||||||||||||||| ||| |||| ||||||||  | ||||  ||||| |||||||||||||||| ||| ||||||||    
T  6603386 tttctcagttgtttgcagttttctaccacatgtttcactcctttctctgtgacataataacaatatttcaataatagttccaaaagcccaggacaactct 6603287  T
Q  165 ttgagatcacatagagtgtttcatcaccaac 195  Q
    |||||||| |||||| |||||||||| ||||    
T  6603286 ttgagatcgcatagactgtttcatcatcaac 6603256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 67 - 198
Target Start/End: Original strand, 6402777 - 6402908
Alignment:
Q  67 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactcttt 166  Q
    |||||||||||| ||  |||||| ||||||||||  |||||| | ||||||||| | |||| || ||| |||||||| ||||||| ||  |||| |||||    
T  6402777 tctcagttgtgtacagttttctatcacatgtttcgctcccttttctgtgacattataacaatctctcaataatagtttcaaaagcccactacaattcttt 6402876  T
Q  167 gagatcacatagagtgtttcatcaccaacctt 198  Q
    |||||||||||||||||||||||| |||||||    
T  6402877 gagatcacatagagtgtttcatcatcaacctt 6402908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 67 - 198
Target Start/End: Original strand, 7119074 - 7119205
Alignment:
Q  67 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactcttt 166  Q
    ||||| |||||||||  ||||| |||||||||||| | | || | ||||||||  | |||| ||||||||||||||||||||||| |  ||||| ||||     
T  7119074 tctcaattgtgtgcagttttcttccacatgtttcacttctttttttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 7119173  T
Q  167 gagatcacatagagtgtttcatcaccaacctt 198  Q
    |||||||||| ||||||||||||| |||||||    
T  7119174 gagatcacatggagtgtttcatcatcaacctt 7119205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 67 - 198
Target Start/End: Original strand, 7131552 - 7131683
Alignment:
Q  67 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactcttt 166  Q
    ||||| |||||||||  ||||| |||||||||||| | | || | ||||||||  | |||| ||||||||||||||||||||||| |  ||||| ||||     
T  7131552 tctcaattgtgtgcagttttcttccacatgtttcactgctttgtttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 7131651  T
Q  167 gagatcacatagagtgtttcatcaccaacctt 198  Q
    |||||||||| ||||||||||||| |||||||    
T  7131652 gagatcacatggagtgtttcatcatcaacctt 7131683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 195
Target Start/End: Original strand, 6432076 - 6432206
Alignment:
Q  65 tttctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactct 164  Q
    ||||||| |||||||||  ||||||||||| |||||| |||||||| ||||||||| ||||||   | ||| ||||||| || |||| || ||||| |||    
T  6432076 tttctcaattgtgtgcatttttctaccacaagtttcactcccttctgtgtgacattatcacaattgtacaggaatagttgcagaagcccacaacaattct 6432175  T
Q  165 ttgagatcacatagagtgtttcatcaccaac 195  Q
    || |||||||||| |||||||||||| ||||    
T  6432176 ttaagatcacataaagtgtttcatcatcaac 6432206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 69 - 200
Target Start/End: Original strand, 19632358 - 19632489
Alignment:
Q  69 tcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttga 168  Q
    |||||||| ||||  |||||||||| ||||||| |||||||| ||||| |||  |||||  ||||||||| |||| ||||||| || ||||| |||||||    
T  19632358 tcagttgtttgcagttttctaccacgtgtttcactcccttctctgtgatattagcacaatttttcagtaagagttgcaaaagcccacaacaattctttga 19632457  T
Q  169 gatcacatagagtgtttcatcaccaacctttg 200  Q
    ||||||| | |||   |||||| |||||||||    
T  19632458 gatcacaaaaagttgctcatcatcaacctttg 19632489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 200
Target Start/End: Complemental strand, 10579915 - 10579785
Alignment:
Q  71 agttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaa-tagttccaaaagcgcagaacaactctttgag 169  Q
    |||||||||||  |||||||||||||||| | |||||||| ||||||  ||| |||   ||||||||| |||||||||||||  | ||||| ||||||||    
T  10579915 agttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaaatagttccaaaagccgacaacaattctttgag 10579816  T
Q  170 atcacatagagtgtttcatcaccaacctttg 200  Q
    |||  ||||||||||| |||| |||| ||||    
T  10579815 atcgaatagagtgttttatcatcaacttttg 10579785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 200
Target Start/End: Original strand, 6415873 - 6416016
Alignment:
Q  57 atccatgttttctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcaga 156  Q
    ||||||| | ||| |||||||||||  | |||||||||||||||| ||||   | ||||||||| ||||||  ||  |||||||||| ||||||| |       
T  6415873 atccatgctctcttagttgtgtgcagttctctaccacatgtttcactcccacttctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgct 6415972  T
Q  157 acaactctttgagatcacatagagtgtttcatcaccaacctttg 200  Q
    |||| ||||||||||||||||||| |||| ||||  ||||||||    
T  6415973 acaattctttgagatcacatagagagttttatcattaacctttg 6416016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 6423134 - 6423252
Alignment:
Q  67 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactcttt 166  Q
    ||||| |||||||||  ||  ||||||| |||||||||| || | ||| ||||  |||||| |||  |||||||||| ||||| | || |||||||||||    
T  6423134 tctcaattgtgtgcagtttaataccacacgtttcagtcctttgtttgttacataatcacaatcttcaagtaatagttgcaaaatcccacaacaactcttt 6423233  T
Q  167 gagatcacatagagtgttt 185  Q
    |||||| ||||||||||||    
T  6423234 gagatcgcatagagtgttt 6423252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 7994362 - 7994245
Alignment:
Q  69 tcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttga 168  Q
    ||||||| |||||  |||||||||||||||||| ||||| ||  || ||||  | ||||  ||  |||||||||| ||||||  |||||||| |||||||    
T  7994362 tcagttgcgtgcagttttctaccacatgtttcactccctcctcggtaacatcattacaaagttcaagtaatagttgcaaaagtccagaacaattctttga 7994263  T
Q  169 gatcacatagagtgtttc 186  Q
    ||||||||| ||||||||    
T  7994262 gatcacatatagtgtttc 7994245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 6586237 - 6586169
Alignment:
Q  122 tcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagatcacatagagtgtttcatca 190  Q
    ||||||||| ||||| ||||||||||||||  || |||| ||||||||||| || ||||||||||||||    
T  6586237 tcacaacctatcagtgatagttccaaaagcctaggacaaatctttgagatcgcacagagtgtttcatca 6586169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 14802342 - 14802386
Alignment:
Q  156 aacaactctttgagatcacatagagtgtttcatcaccaacctttg 200  Q
    ||||| ||||||| ||||||||||||||||||||| |||||||||    
T  14802342 aacaattctttgaaatcacatagagtgtttcatcatcaacctttg 14802386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 71 - 196
Target Start/End: Complemental strand, 51113959 - 51113834
Alignment:
Q  71 agttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgaga 170  Q
    |||| ||||||  ||||||||||||| |||| |||||||| ||||||||  | ||||  ||||||||| |||| ||||||| || |||||||||| ||||    
T  51113959 agttttgtgcatttttctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaactcttcgaga 51113860  T
Q  171 tcacatagagtgtttcatcaccaacc 196  Q
    |||||||||||||||||||| |||||    
T  51113859 tcacatagagtgtttcatcatcaacc 51113834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 200
Target Start/End: Complemental strand, 51764627 - 51764489
Alignment:
Q  62 tgttttctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaac 161  Q
    |||| ||||| |||||||||  |||| ||||||||||||| ||||||||   ||||||| ||||||  || ||||||||||| ||||||| |  |||||     
T  51764627 tgttctctcaattgtgtgcagttttcaaccacatgtttcactcccttctccttgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaat 51764528  T
Q  162 tctttgagatcacatagagtgtttcatcaccaacctttg 200  Q
    ||||||||||| |||||||||||| |||| |||| ||||    
T  51764527 tctttgagatcgcatagagtgttttatcatcaacttttg 51764489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 57 - 200
Target Start/End: Complemental strand, 13470924 - 13470781
Alignment:
Q  57 atccatgttttctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcaga 156  Q
    ||||||| | ||| || ||||||||  | |||||||||||||||| |||||  | ||||||||| | ||||  ||  |||||||||| ||||||| || |    
T  13470924 atccatgctctcttagctgtgtgcagttctctaccacatgtttcactccctcttctgtgacattatgacaaagttcaagtaatagttgcaaaagcccaca 13470825  T
Q  157 acaactctttgagatcacatagagtgtttcatcaccaacctttg 200  Q
    |||| |||||||||||| ||||||||||| ||||  ||||||||    
T  13470824 acaattctttgagatcatatagagtgttttatcattaacctttg 13470781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 189
Target Start/End: Complemental strand, 514910 - 514788
Alignment:
Q  67 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactcttt 166  Q
    ||||||| |||||||  |||  |||||||| |||| |||| ||| ||||| |  |||||||  || ||||||||||| ||||||| || | ||||||||     
T  514910 tctcagtcgtgtgcagtttttcaccacatgcttcactcccgtctctgtgataccttcacaattttgcagtaatagttgcaaaagcccacagcaactcttc 514811  T
Q  167 gagatcacatagagtgtttcatc 189  Q
    ||||||||||  |||| ||||||    
T  514810 gagatcacatgaagtgcttcatc 514788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 71 - 196
Target Start/End: Complemental strand, 45245263 - 45245138
Alignment:
Q  71 agttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgaga 170  Q
    |||||||||||| |||||||||||||||||| |||||| | ||||||||  | |||   ||||| |||||||| ||||||| ||  ||||||||||||||    
T  45245263 agttgtgtgcaattttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgaga 45245164  T
Q  171 tcacatagagtgtttcatcaccaacc 196  Q
    |||||| ||||||||||||| |||||    
T  45245163 tcacatggagtgtttcatcatcaacc 45245138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 195
Target Start/End: Complemental strand, 1037842 - 1037718
Alignment:
Q  71 agttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgaga 170  Q
    |||||||||||  |||| || ||||||||||  || |||| |||||| |  ||||||  || ||| || ||||  |||||| || ||||| |||||||||    
T  1037842 agttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgaga 1037743  T
Q  171 tcacatagagtgtttcatcaccaac 195  Q
    ||| |||||||||||||||| ||||    
T  1037742 tcatatagagtgtttcatcatcaac 1037718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 71 - 190
Target Start/End: Original strand, 546834 - 546953
Alignment:
Q  71 agttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgaga 170  Q
    |||| ||||||  |||||| ||||||||||| |||||||| ||||||||    |||  ||| |||||| | |||||||||| || |||||||||||||||    
T  546834 agttttgtgcagttttctagcacatgtttcactcccttctctgtgacatgaaaacattcttccagtaacaattccaaaagcccacaacaactctttgaga 546933  T
Q  171 tcacatagagtgtttcatca 190  Q
    ||||||||||||||||||||    
T  546934 tcacatagagtgtttcatca 546953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 69 - 182
Target Start/End: Complemental strand, 8184210 - 8184097
Alignment:
Q  69 tcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttga 168  Q
    |||||||||||||| |||||| |||||| |||| |||||  | |||||   ||||||||  || |||||| |||||||||||| || |||||||||||||    
T  8184210 tcagttgtgtgcaattttctagcacatgcttcactccctcatctgtgatcatttcacaattttccagtaacagttccaaaagcccacaacaactctttga 8184111  T
Q  169 gatcacatagagtg 182  Q
    |||  |||||||||    
T  8184110 gattgcatagagtg 8184097  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 190
Target Start/End: Complemental strand, 1548579 - 1548483
Alignment:
Q  94 atgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagatcacatagagtgtttcatca 190  Q
    |||||||| |||||||| ||||| ||||| ||||| |||  |||| |  | ||||||| || ||||||||||||||||||||| |||||||||||||    
T  1548579 atgtttcactcccttctctgtgatatttttacaacgtttttgtaacaagtgcaaaagcccacaacaactctttgagatcacattgagtgtttcatca 1548483  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 200
Target Start/End: Complemental strand, 1513586 - 1513456
Alignment:
Q  67 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactcttt 166  Q
    |||||||||||||||  |||||| |||| | |||| |||| ||| ||||||| |   ||||||||||||||  |||| ||||||| ||  ||||| ||||    
T  1513586 tctcagttgtgtgcatttttctagcacaagcttcactcccatctctgtgacaat---acaacctttcagtatgagttgcaaaagcccacgacaacacttt 1513490  T
Q  167 gagatcacatagagtgtttcatcaccaacctttg 200  Q
    ||||| || ||||||||||||||| |||| ||||    
T  1513489 gagattacgtagagtgtttcatcatcaacatttg 1513456  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 176
Target Start/End: Original strand, 370842 - 370946
Alignment:
Q  72 gttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagat 171  Q
    ||||||||||  |||  |||||||| |||| |||| ||| ||||| |  |||||||  || ||||||||||| |||||||  | ||||||||||||||||    
T  370842 gttgtgtgcagtttttcaccacatgcttcactcccatctttgtgataccttcacaattttgcagtaatagttgcaaaagccgacaacaactctttgagat 370941  T
Q  172 cacat 176  Q
    |||||    
T  370942 cacat 370946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 53761947 - 53761844
Alignment:
Q  71 agttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgaga 170  Q
    |||||||||||  ||||| |||||||||||| |||||| |  |||||||| ||||||  ||||||||||| || ||||||| ||  |||| |||| ||||    
T  53761947 agttgtgtgcagttttcttccacatgtttcactcccttgtccgtgacattatcacaatgtttcagtaata-ttgcaaaagcccacgacaattcttcgaga 53761849  T
Q  171 tcaca 175  Q
    |||||    
T  53761848 tcaca 53761844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 195
Target Start/End: Complemental strand, 55908906 - 55908782
Alignment:
Q  71 agttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgaga 170  Q
    |||||||||||  |||| || ||||||||||  || |||| |||||| |  ||||||  || ||| || ||||  |||||| || ||||| |||||||||    
T  55908906 agttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgaga 55908807  T
Q  171 tcacatagagtgtttcatcaccaac 195  Q
    ||| |||||||||||||||| ||||    
T  55908806 tcatatagagtgtttcatcatcaac 55908782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 558488 - 558538
Alignment:
Q  140 agttccaaaagcgcagaacaactctttgagatcacatagagtgtttcatca 190  Q
    |||||||||||| ||  |||||||||||||||||||| ||||| |||||||    
T  558488 agttccaaaagcccacgacaactctttgagatcacatggagtgcttcatca 558538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 566202 - 566234
Alignment:
Q  163 ctttgagatcacatagagtgtttcatcaccaac 195  Q
    |||||||||||||||||||||||||||| ||||    
T  566202 ctttgagatcacatagagtgtttcatcatcaac 566234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 200
Target Start/End: Original strand, 640849 - 640965
Alignment:
Q  84 tttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagatcacatagagtgt 183  Q
    ||||||||||||| |||| |||||||| ||| ||||  | |||| ||| |||||| || | ||||||  ||   ||| |||||||| |||| ||||||||    
T  640849 tttctaccacatgattcactcccttctttgttacataatgacaatcttccagtaacagatgcaaaagaccacggcaattctttgaggtcacgtagagtgt 640948  T
Q  184 ttcatcaccaacctttg 200  Q
    ||||||| |||| ||||    
T  640949 ttcatcatcaacgtttg 640965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 21834488 - 21834436
Alignment:
Q  67 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacat 119  Q
    |||||||||||| ||  ||||||||| |||||||| |||||||| ||||||||    
T  21834488 tctcagttgtgtacatctttctaccatatgtttcattcccttctctgtgacat 21834436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 57 - 200
Target Start/End: Complemental strand, 19468691 - 19468548
Alignment:
Q  57 atccatgttttctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcaga 156  Q
    ||||||||| ||||||||||| |||| |||||  ||||||||||| ||| |||| ||||||||  | |||||| | ||  |||| |||||||||  || |    
T  19468691 atccatgttctctcagttgtgagcaattttctttcacatgtttcactcctttctctgtgacatcattacaaccgtccacaaataattccaaaagtccaca 19468592  T
Q  157 acaactctttgagatcacatagagtgtttcatcaccaacctttg 200  Q
    |||  |||||||||||||||| |||||||||||| |||||||||    
T  19468591 acagttctttgagatcacataaagtgtttcatcatcaacctttg 19468548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 84 - 195
Target Start/End: Original strand, 7554422 - 7554533
Alignment:
Q  84 tttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagatcacatagagtgt 183  Q
    ||||||||||||| |||| |||||| | ||||||||| ||||| ||||||||||| ||||  |||||  ||  ||||||||||||||||| ||||||||     
T  7554422 tttctaccacatgcttcactcccttttctgtgacattatcacatcctttcagtaacagttgtaaaagtccaccacaactctttgagatcatatagagtgc 7554521  T
Q  184 ttcatcaccaac 195  Q
    ||||||| ||||    
T  7554522 ttcatcatcaac 7554533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 200
Target Start/End: Complemental strand, 15092333 - 15092200
Alignment:
Q  67 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactcttt 166  Q
    ||||| |||||||||  |||||| ||||||||||| ||||   | ||||||||| | ||||  ||  |||||||||| ||||||| || ||||| |||||    
T  15092333 tctcaattgtgtgcagttttctagcacatgtttcactcccacttctgtgacattataacaaaattcaagtaatagttgcaaaagcccacaacaattcttt 15092234  T
Q  167 gagatcacatagagtgtttcatcaccaacctttg 200  Q
    |||||| |||||||||||| ||||  ||||||||    
T  15092233 gagatcgcatagagtgttttatcattaacctttg 15092200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 185
Target Start/End: Complemental strand, 10170262 - 10170145
Alignment:
Q  68 ctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttg 167  Q
    |||||||||| |||  |||||  ||||||||||| ||| |||| ||||||||  | ||||   ||||  ||||||| ||||||  || |||||  |||||    
T  10170262 ctcagttgtgagcagttttctttcacatgtttcactcctttctctgtgacatcattacaattgttcacaaatagtttcaaaagtccacaacaatactttg 10170163  T
Q  168 agatcacatagagtgttt 185  Q
    ||||||||||||||||||    
T  10170162 agatcacatagagtgttt 10170145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 185
Target Start/End: Complemental strand, 10177787 - 10177670
Alignment:
Q  68 ctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttg 167  Q
    |||||||||| |||  |||||  ||||||||||| ||| |||| ||||||||  | ||||   ||||  ||||||| ||||||  || |||||  |||||    
T  10177787 ctcagttgtgagcagttttctttcacatgtttcactcctttctctgtgacatcattacaattgttcacaaatagtttcaaaagtccacaacaatactttg 10177688  T
Q  168 agatcacatagagtgttt 185  Q
    ||||||||||||||||||    
T  10177687 agatcacatagagtgttt 10177670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 200
Target Start/End: Complemental strand, 20478279 - 20478131
Alignment:
Q  52 aaggcatccatgttttctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagc 151  Q
    |||||||||||| | |||||||||||||||  ||||||| |||||||||  ||| |||  ||||||||| || |||  |||||||| || || |||||||    
T  20478279 aaggcatccatgctctctcagttgtgtgcagttttctacgacatgtttcgctcctttcattgtgacattatcgcaatttttcagtagtatttgcaaaagc 20478180  T
Q  152 gcagaacaactctttgagatcacatagagtgtttcatcaccaacctttg 200  Q
     || ||||| || ||||||||||| | | |||||| ||| |||| ||||    
T  20478179 ccacaacaattccttgagatcacagataatgtttcgtcatcaacatttg 20478131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 1577 - 1526
Alignment:
Q  139 tagttccaaaagcgcagaacaactctttgagatcacatagagtgtttcatca 190  Q
    ||||||||||| | | |||||| |||||||||||||||||||||||||||||    
T  1577 tagttccaaaatccctgaacaattctttgagatcacatagagtgtttcatca 1526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 32151291 - 32151341
Alignment:
Q  140 agttccaaaagcgcagaacaactctttgagatcacatagagtgtttcatca 190  Q
    |||| ||||||| ||  ||||||||||||||||||||||||||||||||||    
T  32151291 agttgcaaaagcccactacaactctttgagatcacatagagtgtttcatca 32151341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 18315365 - 18315322
Alignment:
Q  157 acaactctttgagatcacatagagtgtttcatcaccaacctttg 200  Q
    |||||||||||||||||||||||||| ||||||| |||| ||||    
T  18315365 acaactctttgagatcacatagagtgcttcatcatcaacttttg 18315322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 39191 - 39234
Alignment:
Q  157 acaactctttgagatcacatagagtgtttcatcaccaacctttg 200  Q
    ||||||||||||||||||||| ||||||||||||  ||||||||    
T  39191 acaactctttgagatcacataaagtgtttcatcattaacctttg 39234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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