View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19462_high_1 (Length: 806)
Name: NF19462_high_1
Description: NF19462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19462_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 454; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 331 - 800
Target Start/End: Complemental strand, 16977923 - 16977454
Alignment:
| Q |
331 |
tacttgaatgtggtcgaggatttggttagagaggtgatggataaacaaagtggaatttctggattgaatgatgaggagataaacgttgaaaatattccat |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16977923 |
tacttgaatgtggtcgaggatttggttagagaggtgatggataaacaaagtggaatttctggattgaatgatgaggagataaacgttgaaaatagtccat |
16977824 |
T |
|
| Q |
431 |
cttccacaaagaatgaggagatgaaggataaaagtccttatgtaaacaatggtgaaatggagcattcagattatggtgaggagatgagcgataaaaatcc |
530 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16977823 |
cttccacaaagaatgaggagatgaaggataaaagtccttctgtaaacaatggtgaaatggagcattcagattatggtgaggagatgagcgataaaaatcc |
16977724 |
T |
|
| Q |
531 |
ttctgtaaacaatgatgaagttgagcattcagattatggtagtgtagcaatttctaatgcctttgagaagaagaaggattcttttgtacacactgatgaa |
630 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16977723 |
ttctgtaaacaatgatgaagttgagcattcagattatggtagtgtagcaatttctaatgcctttgagaagaagaaggattcttttgtacacactgatgaa |
16977624 |
T |
|
| Q |
631 |
gtggagcattcagatcgaataaagggttcttcttcttcttcaaaccagaaggaaatatcagatatacaaaaggcagtgcaaaatgtctctgatgatgatg |
730 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16977623 |
gtggagcattcagatcgaataaagggttcttcttcttcttcaaaccagaaggaaatatcagatatacaaagggcagtgcaaaatgtctctgatgatgatg |
16977524 |
T |
|
| Q |
731 |
taaatgttagtaaagcaaaagaaagtgtgaatcttcatgatgatcttgatgttgtaaattatgatgatgt |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16977523 |
taaatgttagtaaagcaaaagaaagtgtgaatcttcatgatgatcttgatgttgtaaattatgacgatgt |
16977454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 507 - 603
Target Start/End: Original strand, 10601873 - 10601969
Alignment:
| Q |
507 |
tgaggagatgagcgataaaaatccttctgtaaacaatgatgaagttgagcattcagattatggtagtgtagcaatttctaatgcctttgagaagaag |
603 |
Q |
| |
|
||||||| ||| ||||||| ||||||| |||| ||||||||||| |||||||||||||||||||||||||||| ||||| | |||||||||||||| |
|
|
| T |
10601873 |
tgaggaggtgaaggataaaagtccttctataaagaatgatgaagtggagcattcagattatggtagtgtagcaacttctactacctttgagaagaag |
10601969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 442 - 507
Target Start/End: Original strand, 10601871 - 10601936
Alignment:
| Q |
442 |
aatgaggagatgaaggataaaagtccttatgtaaacaatggtgaaatggagcattcagattatggt |
507 |
Q |
| |
|
||||||||| |||||||||||||||||| | |||| |||| |||| |||||||||||||||||||| |
|
|
| T |
10601871 |
aatgaggaggtgaaggataaaagtccttctataaagaatgatgaagtggagcattcagattatggt |
10601936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 16978184 - 16978144
Alignment:
| Q |
67 |
ggtgagtttgatgataaagataaaaactttgttgatttgga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16978184 |
ggtgagtttgatgataaagataaaaactttgttgatttgga |
16978144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 353 - 440
Target Start/End: Complemental strand, 16968664 - 16968577
Alignment:
| Q |
353 |
tggttagagaggtgatggataaacaaagtggaatttctggattgaatgatgaggagataaacgttgaaaatattccatcttccacaaa |
440 |
Q |
| |
|
|||| |||||||| ||||||| ||||||||||||||||| ||||||||| ||| | || ||||| |||| ||||||||||||||| |
|
|
| T |
16968664 |
tggtgagagaggtaatggatagacaaagtggaatttctgagaggaatgatgaagaggtgaatgttgagaatagtccatcttccacaaa |
16968577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 722 - 789
Target Start/End: Complemental strand, 16977463 - 16977396
Alignment:
| Q |
722 |
atgatgatgtaaatgttagtaaagcaaaagaaagtgtgaatcttcatgatgatcttgatgttgtaaat |
789 |
Q |
| |
|
|||| |||||||||||| | ||| | ||||||||||||||| ||| ||||||| |||||||||||||| |
|
|
| T |
16977463 |
atgacgatgtaaatgttggcaaaaccaaagaaagtgtgaatgttcgtgatgattttgatgttgtaaat |
16977396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 249
Target Start/End: Complemental strand, 16978031 - 16978002
Alignment:
| Q |
220 |
aatagttcttctggctctcactatgatgat |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
16978031 |
aatagttcttctggctctcactatgatgat |
16978002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 334 - 391
Target Start/End: Complemental strand, 17008058 - 17008001
Alignment:
| Q |
334 |
ttgaatgtggtcgaggatttggttagagaggtgatggataaacaaagtggaatttctg |
391 |
Q |
| |
|
|||||| |||| ||| | ||| |||||||||||||||||| |||| |||||||||||| |
|
|
| T |
17008058 |
ttgaatatggtggagaagttgattagagaggtgatggatagacaatgtggaatttctg |
17008001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University