View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19462_high_15 (Length: 234)
Name: NF19462_high_15
Description: NF19462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19462_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 41712515 - 41712296
Alignment:
| Q |
1 |
taaataacataagacattcttaagaaaaatattaaacaaagtgcattcctctataaagatgattctctataaaaatagcttttcatttccagcataannn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41712515 |
taaataacataagacattcttaagaaaaatattaaacaaagtacattcctctataaagatgattctctataaaaatagcttttcatttccagcataattt |
41712416 |
T |
|
| Q |
101 |
nnnnnaacaaaataacttttgaaaatagcttactccaacataactaaaacatcggaacaaagagttgcatgaagaaaggtttagtcgtacagtctatttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41712415 |
tttttaacaaaataacttttgaaaatagcttactccaacataactaaaacatcggaacaaagagttgcatgaagaaaggtagagtcgtacagtctatttg |
41712316 |
T |
|
| Q |
201 |
gtacaacatgtgttgcaatt |
220 |
Q |
| |
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||| |||||||||||||||| |
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| T |
41712315 |
gtagaacatgtgttgcaatt |
41712296 |
T |
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