View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19462_high_5 (Length: 461)
Name: NF19462_high_5
Description: NF19462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19462_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 5 - 444
Target Start/End: Complemental strand, 46357853 - 46357413
Alignment:
| Q |
5 |
tcaatacaaatcacattgaatatttccattcttagctcaatctaaattcataacatctgatttgaatttcaattcagcatccattaattaattcatgcca |
104 |
Q |
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| T |
46357853 |
tcaatacaaatcacattaaatatttccattcttagctcaatctaaattcataacatctgatttgaatttcaattcagcatccattaattaattcatgcca |
46357754 |
T |
|
| Q |
105 |
tatataaacaaaattagcatttaaatttgatgtttatttacctgagtacgcaagattgattgagaatcaaccctagttttagaaccaacactcttttctt |
204 |
Q |
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| T |
46357753 |
tatataaacaaaattagcatttaaatttgatgtttatttacctgagtacgcaagattaattgagaatcaaccctagttttagaaccaacactcttttctt |
46357654 |
T |
|
| Q |
205 |
-agcttcaccttcaacattgtgttcatcccaattctttcttgccgtcttggccgacccagccaacatatcagaaatcttagaaatccctgctaccatctt |
303 |
Q |
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| T |
46357653 |
tagcttcaccttcaacattgtgttcatcccaattctttcttgttgtcttggccgacccagccaacatatcagaaatcttagaaatcccagctaccatctt |
46357554 |
T |
|
| Q |
304 |
cttcttcgcagtggaatctccaacagccggcgaaaatttgattcccccagacaaccttctcccaggagaaattgaagctcttctaggattgggcgaaggc |
403 |
Q |
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|||||| ||||||||||||||||| || |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
46357553 |
cttctttgcagtggaatctccaaccgctggcgaaaacttgattcccccggacaaccttctccccggagaaattgaagctcttctaggattcggcgaaggc |
46357454 |
T |
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| Q |
404 |
tgcttccttgctgtcggagaaggctgtctatacctggaggg |
444 |
Q |
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| T |
46357453 |
tgcttccttgccgtcggagagggctgtctatacctggaggg |
46357413 |
T |
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