View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19462_high_7 (Length: 396)
Name: NF19462_high_7
Description: NF19462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19462_high_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 10991839 - 10992234
Alignment:
| Q |
1 |
acttataaacacatgttcatgccacatttttattagaattttaataaattcagttagttagagagtttatcatttgagttagttaaaagtcgagaaaaac |
100 |
Q |
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| T |
10991839 |
acttataaacacatgttcatgccacatttttattagaattttaataaattcagttagttagagagtttatcatttgagttagttaaaagtcgagaaaaac |
10991938 |
T |
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| Q |
101 |
aagggttaacttgtcggttaagtaaacttaagataactagtttgtaatagnnnnnnnnacagtttttgtatataaatacctatgcctagttgctgattaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10991939 |
aagggttaacttgtcggttaagtaaacttaagataactagtttgtaatagttttttttacagtttttgtatataaatacctatgcctagttgctgattaa |
10992038 |
T |
|
| Q |
201 |
taatatgagaagcattatattctcaagtcaataaagtttgttttaaatttttctgtttctctctaatcttctaaaaccctgcacttataagtttcttcac |
300 |
Q |
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| T |
10992039 |
taatatgagaagcattatattctcaagtcaataaagtttgttttaaatttttctgtttctctctaatcttctaaaaccctgcacttataagtttcttcac |
10992138 |
T |
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| Q |
301 |
tttctctcaatttgttctatcaattttgtctgatgtgggactctttgacattaagtatcttttacaatcaatcaatgacataaactaagtttggct |
396 |
Q |
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| T |
10992139 |
tttctctcaatttgttctatcaattttgtctgatgtgggactctttaacattaagtatcttttacaatcaatcaatgacataaactaagtttggct |
10992234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 205
Target Start/End: Complemental strand, 12748767 - 12748595
Alignment:
| Q |
31 |
tattagaattttaataaattcagttagttagagagtttatcatttgagttagttaaaagtcgaga-aaaacaagggttaacttgtcggttaagtaaactt |
129 |
Q |
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|||||| | |||||||||||||||||||||||| ||||| ||||||||||||| |||| ||| ||||||||||| ||||||| |||||||||||| |
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| T |
12748767 |
tattaggagtttaataaattcagttagttagag--tttatattttgagttagttagaagttgagggaaaacaagggtaaacttgttggttaagtaaaccg |
12748670 |
T |
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| Q |
130 |
aagataactagtttgtaatagnnnnnnnnacagtttttgtatataaatacctatgcctagttgctgattaataata |
205 |
Q |
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| T |
12748669 |
aagataactagtttgttataaagtttgtaacag-ttttgtatataaatacttatgcctagttactaataaataata |
12748595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 199 - 329
Target Start/End: Complemental strand, 12748235 - 12748105
Alignment:
| Q |
199 |
aataatatgagaagcattatattctcaagtcaataaagtttgttttaaattt-ttctgtttctctctaatcttctaaaaccctgcacttataagtttctt |
297 |
Q |
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|||||||| ||||| ||||||||||||||| |||||||||| |||| | || ||||||| |||| | |||||| ||||| |||| ||||| ||||||| |
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| T |
12748235 |
aataatataagaagtattatattctcaagttaataaagtttatttttcagttcttctgtt-ctctttggtcttctcaaaccttgcatttatatgtttctt |
12748137 |
T |
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| Q |
298 |
cactttctctcaatttgttctatcaattttgt |
329 |
Q |
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| T |
12748136 |
cactttctctctatttgttctatcaaatttgt |
12748105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 7134074 - 7134103
Alignment:
| Q |
1 |
acttataaacacatgttcatgccacatttt |
30 |
Q |
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| T |
7134074 |
acttataaacacatgttcatgccacatttt |
7134103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 34847061 - 34847089
Alignment:
| Q |
2 |
cttataaacacatgttcatgccacatttt |
30 |
Q |
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| T |
34847061 |
cttataaacacatgttcatgccacatttt |
34847089 |
T |
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