View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19462_high_8 (Length: 369)
Name: NF19462_high_8
Description: NF19462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19462_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 7 - 354
Target Start/End: Complemental strand, 33909447 - 33909100
Alignment:
| Q |
7 |
gatcaagaacactaagatcaggtaaataaccgattgaagctggaatttctccacttagttgattttggctcaaatttagtgtcagtaatgacttccatga |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33909447 |
gatcaagaacactaagatcaggtaaataaccgattgaagctggaatttctccacttagttgattttggctcaaatttagtgtcagtaatgaattccatga |
33909348 |
T |
|
| Q |
107 |
tattacatcaaatggaagtggcccttttagctgattctgatcaagcgacaatttttgtagcttatgaagtgatgttatctcttgtggaatacttccatta |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33909347 |
tattacatcaaatggaagtggcccttttagctgattctgatcaagcgacagtgtttgtagcttatgaagtgatgttatctcttgtggaatacttccatta |
33909248 |
T |
|
| Q |
207 |
agattattcttgcttgctatgaactcaaccacattagtccaagaagatactccaattggaattccaccagaaaattgattataacttatatccagaagtg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33909247 |
agattattcttgcttgctatgaactcaaccacattagtccaagaagatactccaattggaattccaccagaaaattgattataacttatatccaaaagtg |
33909148 |
T |
|
| Q |
307 |
aaatacttgatgacaaattttgaggaagctcaccattgaacttattat |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33909147 |
aaatacttgatgacaaattttgaggaagctcaccattgaacttattat |
33909100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 8 - 354
Target Start/End: Complemental strand, 33885215 - 33884869
Alignment:
| Q |
8 |
atcaagaacactaagatcaggtaaataaccgattgaagctggaatttctccacttagttgattttggctcaaatttagtgtcagtaatgacttccatgat |
107 |
Q |
| |
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||||||||| ||||| |||||||| ||| |||||| |||||||| |||| | |||||||||||||||||||| | ||| || || ||||||||| |
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| T |
33885215 |
atcaagaacgctaagggaaggtaaatgaccaattgaaattggaatttgtccattaagttgattttggctcaaattcaaagtcgccaaggatttccatgat |
33885116 |
T |
|
| Q |
108 |
attacatcaaatggaagtggcccttttagctgattctgatcaagcgacaatttttgtagcttatgaagtgatgttatctcttgtggaatacttccattaa |
207 |
Q |
| |
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|||||||| ||||||||| |||||||||||| || ||||||||| ||||| ||| || ||| |||| | ||||| |||||| |||||||||||||||| |
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| T |
33885115 |
attacatctgatggaagtgacccttttagctggttttgatcaagcaacaatctttcaagattaggaagagttgttaactcttgaggaatacttccattaa |
33885016 |
T |
|
| Q |
208 |
gattattcttgcttgctatgaactcaaccacattagtccaagaagatactccaattggaattccaccagaaaattgattataacttatatccagaagtga |
307 |
Q |
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||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| | || ||| |
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| T |
33885015 |
gataattcttgcttgctataaactcaaccacactagtccaagaagatactccaattggaattccaccataaaattgattgtaacttatatcaaaaactga |
33884916 |
T |
|
| Q |
308 |
aatacttgatgacaaattttgaggaagctcaccattgaacttattat |
354 |
Q |
| |
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||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
33884915 |
aatacttgaagacaaattttgaggaatttcaccattgaacttattat |
33884869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 8 - 354
Target Start/End: Original strand, 33896057 - 33896403
Alignment:
| Q |
8 |
atcaagaacactaagatcaggtaaataaccgattgaagctggaatttctccacttagttgattttggctcaaatttagtgtcagtaatgacttccatgat |
107 |
Q |
| |
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||||||||| ||||| |||||||| ||| |||||| ||||||||| | || | |||||||||||||||||||| | |||| || || ||||||||| |
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| T |
33896057 |
atcaagaacgctaagggaaggtaaatgaccaattgaaactggaatttgtacattaagttgattttggctcaaattcaaagtcaccaaggatttccatgat |
33896156 |
T |
|
| Q |
108 |
attacatcaaatggaagtggcccttttagctgattctgatcaagcgacaatttttgtagcttatgaagtgatgttatctcttgtggaatacttccattaa |
207 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| ||||||||| ||| | ||| || ||| |||| | ||||| |||||| |||||||||||||| | |
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| T |
33896157 |
attacatcaaatggaagtgacccttttagctgattttgatcaagcaacagtctttcaagattaggaagagttgttaactcttgaggaatacttccattga |
33896256 |
T |
|
| Q |
208 |
gattattcttgcttgctatgaactcaaccacattagtccaagaagatactccaattggaattccaccagaaaattgattataacttatatccagaagtga |
307 |
Q |
| |
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||| ||||||||||||||| |||| ||| | ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| | |||||| |
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| T |
33896257 |
gataattcttgcttgctataaacttaactagattagtccaagaagatactccaattggaattccaccataaaattgattgtaacttatatcaaaaagtga |
33896356 |
T |
|
| Q |
308 |
aatacttgatgacaaattttgaggaagctcaccattgaacttattat |
354 |
Q |
| |
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||||||||| || || |||||||| | |||||| |||||||||||| |
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| T |
33896357 |
aatacttgaagaaaagttttgaggcatttcaccagtgaacttattat |
33896403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 286
Target Start/End: Original strand, 24792125 - 24792365
Alignment:
| Q |
46 |
ctggaatttctccacttagttgattttggctcaaatttagtgtcagtaatgacttccatgatattacatcaaatggaagtggcccttttagctgattctg |
145 |
Q |
| |
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||||||||| |||| ||||| || ||||||||||| || || | ||| |||||||||||||||| |||| |||||| | | || | | ||||||||| |
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| T |
24792125 |
ctggaatttgtccagaaagttggttctggctcaaattaagagttactaaggacttccatgatattatatcagatggaatttgaccagtgaactgattctg |
24792224 |
T |
|
| Q |
146 |
atcaagcgacaatttttgtagcttatgaagtgatgttatctcttgtggaatacttcca-ttaagattattcttgcttgctatgaactcaaccacattagt |
244 |
Q |
| |
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||||||| | | || || || |||||||||||| ||||||||||||||||||| |||||| ||| || ||||| | || | ||||||||||| |
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| T |
24792225 |
atcaagcaaaagagttgttaattttggaagtgatgttaactcttgtggaatacttccatttaaga-aattgttccttgcattaaaaactaccacattagt |
24792323 |
T |
|
| Q |
245 |
ccaagaagatactccaattggaattccaccagaaaattgatt |
286 |
Q |
| |
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||| |||||||| ||| |||||||| ||||||||| ||||| |
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| T |
24792324 |
ccatgaagatacaccagatggaattctaccagaaaactgatt |
24792365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 295
Target Start/End: Complemental strand, 33916054 - 33916003
Alignment:
| Q |
244 |
tccaagaagatactccaattggaattccaccagaaaattgattataacttat |
295 |
Q |
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|||||||||| |||||| ||||||||| ||||||||| ||||||||||||| |
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| T |
33916054 |
tccaagaagaaactccatttggaattctaccagaaaaccgattataacttat |
33916003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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