View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19462_low_11 (Length: 252)
Name: NF19462_low_11
Description: NF19462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19462_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 49019479 - 49019708
Alignment:
| Q |
18 |
acaaagaacaattgaaggttgcactnnnnnnnncacttaacaaaaataaatgttgcatatcataatcctactcacttcattatgcctacaatcatgattc |
117 |
Q |
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| T |
49019479 |
acaaagaacaattgaaggttgcac-caaaaaaacacttaacaaaaataaatgttgcatatcataatcctactcacttcattatgcctacaatcatgattc |
49019577 |
T |
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| Q |
118 |
ttggttccatcacccgcatgctcttttctaaacactctcacacttcttcttcttaatactctcattcttattcatacacacctataaatctcattcannn |
217 |
Q |
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| T |
49019578 |
ttggttccatcacccgcatgctcttttctaaacactctcaca---cttcttcttaatactctcattcttattcatacacacctataaatctcattca-cc |
49019673 |
T |
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| Q |
218 |
nnnnaatcctttctctcacttcaacctcaacattt |
252 |
Q |
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| T |
49019674 |
ccccaatcctttctctcacttcaacctcaacattt |
49019708 |
T |
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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 7082253 - 7082175
Alignment:
| Q |
68 |
tgttgcatatcataatcctactcacttcattatgcctacaatcatgattcttggttccatcacccgcatgctcttttct |
146 |
Q |
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|||||||||||||||||| | ||||||||||||||| | ||||||||||||||||| ||||||||||||||||| |||| |
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| T |
7082253 |
tgttgcatatcataatcccattcacttcattatgcccaaaatcatgattcttggtttcatcacccgcatgctctcttct |
7082175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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