View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19462_low_14 (Length: 250)
Name: NF19462_low_14
Description: NF19462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19462_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 9079489 - 9079699
Alignment:
| Q |
19 |
attctatcacaattgatgaatttgaatttataactgataacgaataagataactgataacagataaaagtgtacctgatccatcatcttgtgtttgagta |
118 |
Q |
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| T |
9079489 |
attctatcgcaatgaatgaatttgaatttataactga---cgaataatataatcgataacagataagattgtacctgatccatcatattgtgtttgagta |
9079585 |
T |
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| Q |
119 |
catgattacgatcaagaattttgatggcaacatattctccattttgaacattcttagccaacttcaccttagcaaaacttccttcaccaattgtttttcc |
218 |
Q |
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| T |
9079586 |
catgattacgatcaagaattttgatggcaacataatctccattttcaacattcttagccaacttcaccttagcaaaacttccttcaccaattgtttttcc |
9079685 |
T |
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| Q |
219 |
cagctcatacttcc |
232 |
Q |
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|||||||||||||| |
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| T |
9079686 |
cagctcatacttcc |
9079699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 9088266 - 9088476
Alignment:
| Q |
19 |
attctatcacaattgatgaatttgaatttataactgataacgaataagataactgataacagataaaagtgtacctgatccatcatcttgtgtttgagta |
118 |
Q |
| |
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|||||||| |||| |||||||||||||||||||||| ||||||| |||| |||||||||||| | ||||||||||||||||| ||||||||||||| |
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| T |
9088266 |
attctatcgcaatgaatgaatttgaatttataactga---cgaataatataatcgataacagataagattgtacctgatccatcatattgtgtttgagta |
9088362 |
T |
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| Q |
119 |
catgattacgatcaagaattttgatggcaacatattctccattttgaacattcttagccaacttcaccttagcaaaacttccttcaccaattgtttttcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9088363 |
catgattacgatcaagaattttgatggcaacataatctccattttcaacattcttagccaacttcaccttagcaaaacttccttcaccaattgtttttcc |
9088462 |
T |
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| Q |
219 |
cagctcatacttcc |
232 |
Q |
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|| ||| ||||||| |
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| T |
9088463 |
catctcgtacttcc |
9088476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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