View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19462_low_16 (Length: 233)
Name: NF19462_low_16
Description: NF19462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19462_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 36847190 - 36847308
Alignment:
| Q |
1 |
ttgtcctctctctatgcataaaccagctccaatagtgt--atttggtatatttagaagattattttattccttatgagccaaatataccaaataccacca |
98 |
Q |
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| T |
36847190 |
ttgtcctctctctatgcataaaccagctccaatagtgtgtatttggtatatttagaagattattttattccttatgagccaaatataccaaataccacca |
36847289 |
T |
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| Q |
99 |
tcacaaaaactgatatatt |
117 |
Q |
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||||||||||||||||||| |
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| T |
36847290 |
tcacaaaaactgatatatt |
36847308 |
T |
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Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 36847337 - 36847405
Alignment:
| Q |
111 |
atatattgaacttatggactattttaagaactattgttggagatgctactattataactctcatctttg |
179 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36847337 |
atatattgaacttatggactattttaagaactattgttggagatgctactattataactctcatctttg |
36847405 |
T |
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