View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19462_low_3 (Length: 651)
Name: NF19462_low_3
Description: NF19462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19462_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 16 - 510
Target Start/End: Complemental strand, 50531761 - 50531268
Alignment:
| Q |
16 |
cttttttgcatccattcgggatttcacgcgtagtaagnnnnnnnnnnnn-aagaaataaattgttttatctcctttttgctcttaagagcaaagagtaac |
114 |
Q |
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| T |
50531761 |
cttttttgcatccattcgggatttcacgcgtagtaagtttttctttttttaagaaataaattgttttatctcctttttgctcttaagagcaaagagtaac |
50531662 |
T |
|
| Q |
115 |
tttatgtgaactttactggatctggaaacctattttaaaataagcttaaaatcttgagaatatacactagcttattttctttgtgtgtacaaagacgtgt |
214 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50531661 |
tttacgtgaactttactggatctggaaacctattttaaaataagcttaaaatcttgagaatatacactagcttattttctttgtgtgtacaacgacgtgt |
50531562 |
T |
|
| Q |
215 |
tgttatgtgacatttgacaacaatctaattaaggacctctttcgtacatgaaagtgatttttacatacattgaaattaattggaatcaaaataataaaag |
314 |
Q |
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| T |
50531561 |
tgttatgtgacgtttgacaacaatctaattaaggacctctttcgtacatgaaagtgatttttacatacattgaaattaattggaatcaaaataataaaag |
50531462 |
T |
|
| Q |
315 |
gacttgtggattaagttatccacttaatgcataacagggttagaannnnnnnnnnnctttggtaaacacggtcagcaatctattatggctaaaggaatca |
414 |
Q |
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| T |
50531461 |
gacttgtggattaagttatccacttaatgcataacatggttagaa--tttttttttctttggtaaacacggtcagcaatctattatggctaaaggaatca |
50531364 |
T |
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| Q |
415 |
attttttaaaatttaaggaaagtcctcagaaatttgacttgtaataaaagttttgagctgtaaaaggtatagacttcaaatttcatttccgtaagc |
510 |
Q |
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| T |
50531363 |
aatttttaaaatttaaggaaagtcctcagaaatttgacttgtaataaaagttttgagctgtaaaaggtatagacttcaaatttcatttccgtaagc |
50531268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 527 - 641
Target Start/End: Complemental strand, 50531225 - 50531111
Alignment:
| Q |
527 |
ttgaatgaaggtcatatttacttgcatgcgaccaatctaagtggtaagggtttgtatttaagtaaatagttttctttttaacaaaaataaaacgatggtt |
626 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50531225 |
ttgaatgaaggtcatatttacttgcatgcgaccaatctaagtggtaagggtttgtatttaagtaaatagttttctttttaacaaaaataaaatgatggtt |
50531126 |
T |
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| Q |
627 |
aaaggttcatttcat |
641 |
Q |
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| T |
50531125 |
aaaggttcatttcat |
50531111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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